View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_31 (Length: 366)
Name: NF16798_low_31
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 8141497 - 8141167
Alignment:
| Q |
16 |
gagaagcaacaaaaaacaaacaacgaaatcacgaggnnnnnnnnntcataccgagggaccaatagatacaccattcttcaatgctgtgatcaagtgaaaa |
115 |
Q |
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| T |
8141497 |
gagaagcaacaaaaaacaaacaacgaaatcacgaggaaaaaaaaatcataccgagggaccaatggatacaccattcttcaatgctgtgatcaagtgaaaa |
8141398 |
T |
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| Q |
116 |
atgaaatgcttagttcaatgtgaaaatgcaatagaaaacctttagtgacatattttagatttttcataaattcttacgagagacagttgcttgcatatca |
215 |
Q |
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| T |
8141397 |
atgaaatgcttagttcaatgtgaaaatgcaatagaaaacctttagtgacatattttagatttttcataaattcttacgagagacagttgcttgcatatca |
8141298 |
T |
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| Q |
216 |
ctgtagtagtccatgttattattttgtggtcctttgctttgtgcataatatgtggagtaataattcacaccaagaaaatcataggaatctttgataatta |
315 |
Q |
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| T |
8141297 |
ctgtagtagtccatgtttttattttgtggtcctttgctttgtgcataatatgtggagtaataattcacaccaagaaaatcataggaattttttataatta |
8141198 |
T |
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| Q |
316 |
cagattcaaattttgtgaatttggggagtct |
346 |
Q |
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| T |
8141197 |
cagattcaaattttgtgaatttggggagtct |
8141167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 8165026 - 8164930
Alignment:
| Q |
250 |
tgctttgtgcataatatgtggagtaataattcacaccaagaaaatcataggaatctttgataattacagattcaaattttgtgaatttggggagtct |
346 |
Q |
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| T |
8165026 |
tgctttgtgcataatatgtggtgtaataattcacaccaagaaaatcataggaacctttgataattttatattcttcttttgtgaattttgggagtct |
8164930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 8165257 - 8165203
Alignment:
| Q |
62 |
cataccgagggaccaatagatacaccattcttcaatgctgtgatcaagtgaaaaa |
116 |
Q |
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| T |
8165257 |
cataccgaggagccaatagttactccattcttcattgctgtgatcaagagaaaaa |
8165203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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