View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_low_33 (Length: 354)

Name: NF16798_low_33
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_low_33
NF16798_low_33
[»] scaffold0001 (1 HSPs)
scaffold0001 (44-336)||(45962-46255)


Alignment Details
Target: scaffold0001 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 44 - 336
Target Start/End: Original strand, 45962 - 46255
Alignment:
Q  44 tctagtcttatttgaactctgtctttgtcatagatccataagatcaaaagttacatcctttaactttatcaatgaatcagcttctaaaacaaatactgat 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  45962 tctagtcttatttgaactctgtctttgtcatagatccataagatcaaaagttacatcctttaactttatcaatgaatcaacatctaaaacaaatactgat 46061  T
Q  144 aaaa-aattatgacagtacatagtttaaaatcaataacaagccccaaataaaacaatacatagagcaagtaacaccaagtataaaaagttatcacgtgtt 242  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46062 aaaaaaattatgacagtacatagtttaaaatcaataacaagccccaaataaaacaatacatagaacaagtaacaccaagtataaaaagttatcacgtgtt 46161  T
Q  243 tagatcaaactcagcttccgaaacaaattaagatcttttcaattagtatgctacctaataatagtaagctcatctcatatgcttttgaccaaag 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46162 tagatcaaactcagcttccgaaacaaattaagatcttttcaattagtatgctacctaataatagtaagctcatctcatatgcttttgaccaaag 46255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University