View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_34 (Length: 344)
Name: NF16798_low_34
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 328
Target Start/End: Complemental strand, 13284416 - 13284110
Alignment:
| Q |
29 |
atatctacatataatttaagaattccttgaactttgatgtttttatgatttaaaaaactctccaattccaagtcatttacccaaaaaagagtggcacgta |
128 |
Q |
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| T |
13284416 |
atatgtacatataatttaagaattctttgaactttgaggtttttatgatttaaaaaactctccaattccaagtcatttatagaaaatagagtggcacgta |
13284317 |
T |
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| Q |
129 |
aaatgtgtctatctatacgttccaaaagg--------ataaaaggaaccaccagaatattct--gtgtacaagtaaattaagaatatgtcccacaactag |
218 |
Q |
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| T |
13284316 |
aaatgtgtctatctatacgttccaaaagggaaaaaggataaaaggaaccaccagaatattctttgtgtacatgtaaattaagaatatgtcccacaactag |
13284217 |
T |
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| Q |
219 |
ctaccccctgcccaaaatgataaataaactagcaagctaatatgatgatatacaaagttgcattatgaataaaatgtattaaaaatacttgaatttcata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13284216 |
ctaccccctgcccaaaatgataaataaactagcaagctaata---tgatatacaaagttgcattatgaataaaatgtattaaaaatacttgaatttcata |
13284120 |
T |
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| Q |
319 |
tggcattaat |
328 |
Q |
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|||||||||| |
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| T |
13284119 |
tggcattaat |
13284110 |
T |
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