View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16798_low_4 (Length: 749)
Name: NF16798_low_4
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 2701474 - 2701190
Alignment:
| Q |
15 |
agatttgactgtagaatttggtaaatacaattgttgtggagactgaagatggattttgtaatataattattgtaaattatacaaatgcttctcattcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2701474 |
agatttgactgtagaatttggtaaatacaattgttgtggagactgaagatggattttgtaatat---tattgtaaattatacaaatgcttgtcattcaaa |
2701378 |
T |
|
| Q |
115 |
atatatcttaattcaaaatatgtaagaaactatgtaaattatactaagaaagaattattggtacggttcaattcaatcccattttttgtttccaatttct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2701377 |
atatatcttaattcaaaatatgtaagaaactatgtaaattatactaagaaagaattattggtacggttcaattcaatcccattttttgtttccaatttct |
2701278 |
T |
|
| Q |
215 |
gtgcaaaacatgcctaaccctaaatctatcatggctagagttcaaggtattttcaaataatataagttggcgtaaaagaataataattat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2701277 |
atgcaaaacatgcctaaccctaaatctatcattgctagagttcaaggtattttcaaata--ataagttggcgtaaaagaataataattat |
2701190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 288 - 440
Target Start/End: Complemental strand, 2701178 - 2701026
Alignment:
| Q |
288 |
aaaagaataataattataataatagcaaagtcggtatnnnnnnnnn--ttaataatagcaaagttttaaacatttggccaagaaatgtgccacctgtaac |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
2701178 |
aaaagaataataattataataatagcaaagtcggtataaaaaaaaaaattaataatagcaaagttttaaatatttggccaagaaatgtgccacacgtaag |
2701079 |
T |
|
| Q |
386 |
acataaatttatcaaaaaggaaattcattgatttcacaagattattggttaaaat |
440 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2701078 |
acataaatttatcaaaaagg--attcattgatttcacaagattattggttaaaat |
2701026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 2699068 - 2698994
Alignment:
| Q |
68 |
ttttgtaatataattattgtaaattatacaaatgcttctcattcaaaatatatcttaattcaaaatatgtaagaa |
142 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
2699068 |
ttttctaatataactattgtaaattatacaaatgcttgtcatgcaaaatatgtcttaattcaaaatatataagaa |
2698994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 2700332 - 2700282
Alignment:
| Q |
15 |
agatttgactgtagaatttggtaaatacaattgttgtggagactgaagatg |
65 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2700332 |
agatttgaccgtaaaatttggtaaatacaattgttgtggagactgaagatg |
2700282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 2698852 - 2698816
Alignment:
| Q |
335 |
taataatagcaaagttttaaacatttggccaagaaat |
371 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2698852 |
taataataggaaagttttaaacatttggccaagaaat |
2698816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 2698956 - 2698878
Alignment:
| Q |
197 |
tttttgtttccaatttctgtgcaaaacatgcctaaccctaaatctatcatggctagagttcaaggtattttcaaataata |
276 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| || ||||| ||| ||| |||||||| ||| ||||||||| ||||| |
|
|
| T |
2698956 |
tttttctttccaatttctatgcaaaacatgcctgactctaaa-ctaacattgctagagtgcaacctattttcaagtaata |
2698878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University