View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_40 (Length: 316)
Name: NF16798_low_40
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 46793392 - 46793113
Alignment:
| Q |
20 |
tcaatcaaagagtcattataattttgttgtgagtcctatcagttcgtgagaattacttaatactctatagcattactagtaaaacattatgtagcatagt |
119 |
Q |
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| T |
46793392 |
tcaaacaaagagtcattataattttgttgtgagtcctatcaattcgtgagaattacttaataccctatagcattactagtaaaacattatgtagcatagt |
46793293 |
T |
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| Q |
120 |
agcttccctcaaataaaaatgtagcatagcatgccataaccttaattttcattttttaaaatgtttccgcaaactaaagttgttgcatgatcttgccctt |
219 |
Q |
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| T |
46793292 |
agcttccctcaaataaaaatgtagcatagcatgcaataaccctaattttcattttttaaaatatttccgcaaac-----------------cttgccctt |
46793210 |
T |
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| Q |
220 |
tgagtagagagctagttctatgcggcannnnnnncaccttaaattgttgcatgaaaataactagtatgtaattgaaatacattagtatactttttgt |
316 |
Q |
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| T |
46793209 |
tgagtggagagctagttctatgcggcatttttttcaccttgaattgttgcatgaaaataactagtatgtaattgaaatacattagtatactttttgt |
46793113 |
T |
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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 150 - 306
Target Start/End: Complemental strand, 22120150 - 22119994
Alignment:
| Q |
150 |
atgccataaccttaattttcattttttaaaatgtttccgcaaactaaagttgttgcatgatcttgccctttgagtagagagctagttctatgcggcannn |
249 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |
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| T |
22120150 |
atgccataaccctaattttcattttttaaaatgtttccgaaaactaaagttgttgcatgatctggccctttgagtggagtgctagttctatgcggcattt |
22120051 |
T |
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| Q |
250 |
nnnncaccttaaattgttgcatgaaaataactagtatgtaattgaaatacattagta |
306 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22120050 |
ttttcaccttgaattgttgcatgaaaataactagtatgtaattgaaatacattagta |
22119994 |
T |
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