View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_low_41 (Length: 314)

Name: NF16798_low_41
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_low_41
NF16798_low_41
[»] chr2 (5 HSPs)
chr2 (1-298)||(8904245-8904541)
chr2 (132-191)||(30313098-30313157)
chr2 (76-121)||(18204504-18204549)
chr2 (132-176)||(6422053-6422097)
chr2 (132-188)||(30323387-30323443)
[»] chr5 (2 HSPs)
chr5 (53-191)||(31509543-31509684)
chr5 (132-161)||(35150681-35150710)
[»] chr6 (4 HSPs)
chr6 (19-191)||(6071052-6071227)
chr6 (100-185)||(8481853-8481941)
chr6 (132-161)||(12092212-12092241)
chr6 (1-121)||(10074408-10074528)
[»] chr3 (1 HSPs)
chr3 (91-160)||(33809143-33809215)
[»] chr4 (2 HSPs)
chr4 (133-184)||(21504799-21504850)
chr4 (135-191)||(39099932-39099988)
[»] scaffold0113 (1 HSPs)
scaffold0113 (132-191)||(39759-39818)
[»] chr7 (1 HSPs)
chr7 (132-179)||(48243257-48243304)
[»] chr1 (2 HSPs)
chr1 (51-121)||(24600409-24600479)
chr1 (139-191)||(7329199-7329251)
[»] chr8 (2 HSPs)
chr8 (132-161)||(3670011-3670040)
chr8 (53-121)||(4154763-4154831)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 8904541 - 8904245
Alignment:
Q  1 gacactacacttttacctaaaatcatatggcaattggtttatggatctcattacttataaaatgttcaacctaaacttttctaacagacatgggacttct 100  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||| ||||||| ||||||||||||    
T  8904541 gacaccacacttttacccaaaaccatatggcaattggtttatggatcccatcacttataaaatatccaacctaaacttt-ctaacaggcatgggacttct 8904443  T
Q  101 aacttacaattgcacacaacaatctatctctgtgtgagtccatcaattcatcatgctcaccttttaagtggaagttctttcatccgcacactctatcttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8904442 aacttacaattgcacacaacaatctatctctgtgtgagtccatcaattcatcatgctcacctttcaagtggaagttctttcatccgcacactctatcttg 8904343  T
Q  201 taccacttttgtcatttgcgcactaaacgtcgcggcctaagcaccttgccaggaataccttaagacatgtgtaaattacaatagagacaggtaagtga 298  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8904342 taccacttttgtcatttgcgcactaaacgtcgtcgcctaagcaccttgccaggaataccttaagacttgtgtaaattacaatagagacaggtaagtga 8904245  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 30313157 - 30313098
Alignment:
Q  132 gtgtgagtccatcaattcatcatgctcaccttttaagtggaagttctttcatccgcacac 191  Q
    ||||||||||| ||||||||||||||||||  | ||| ||||| ||||||||||||||||    
T  30313157 gtgtgagtccaacaattcatcatgctcacccctcaagcggaagctctttcatccgcacac 30313098  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 18204504 - 18204549
Alignment:
Q  76 cttttctaacagacatgggacttctaacttacaattgcacacaaca 121  Q
    |||||||||| ||| |||||||||||||| ||| ||||||||||||    
T  18204504 cttttctaaccgacttgggacttctaactcacacttgcacacaaca 18204549  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 6422097 - 6422053
Alignment:
Q  132 gtgtgagtccatcaattcatcatgctcaccttttaagtggaagtt 176  Q
    ||||||||||||||||||||||||||| || || ||| |||||||    
T  6422097 gtgtgagtccatcaattcatcatgctcccccttcaagcggaagtt 6422053  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 30323443 - 30323387
Alignment:
Q  132 gtgtgagtccatcaattcatcatgctcaccttttaagtggaagttctttcatccgca 188  Q
    |||||||||||||||||||||||||||| |  | ||| ||| | |||||||||||||    
T  30323443 gtgtgagtccatcaattcatcatgctcatccctcaagcggatgctctttcatccgca 30323387  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 31509684 - 31509543
Alignment:
Q  53 acttataaaatgttcaacctaaacttttctaacagacatgggacttctaacttacaattgcacacaacaatctatctct---gtgtgagtccatcaattc 149  Q
    ||||||||| || |||||||  ||||||||| | ||  || ||| | ||||| ||| |||||||||||||||| || ||   ||||||||||||||||||    
T  31509684 acttataaagtgctcaacctccacttttctatccgatgtgagacatataactcacacttgcacacaacaatctctccctcaagtgtgagtccatcaattc 31509585  T
Q  150 atcatgctcaccttttaagtggaagttctttcatccgcacac 191  Q
    ||||||||||||  | ||| ||||| ||||||||| ||||||    
T  31509584 atcatgctcacccctcaagcggaagctctttcatctgcacac 31509543  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 35150710 - 35150681
Alignment:
Q  132 gtgtgagtccatcaattcatcatgctcacc 161  Q
    ||||||||||||||||||||||||||||||    
T  35150710 gtgtgagtccatcaattcatcatgctcacc 35150681  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 6071227 - 6071052
Alignment:
Q  19 aaaatcatatggcaattggtttatggatctcattacttataaaatgttcaacctaaacttttctaacagacatgggacttctaacttacaattgcacaca 118  Q
    |||||| || ||||||  |||||||||||   | ||||||||| ||||||||||  |||||||||    |  |||||| | ||||| ||| |||||||||    
T  6071227 aaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccacttttctattcaatgtgggacatataactcacacttgcacaca 6071128  T
Q  119 acaatctatctctg---tgtgagtccatcaattcatcatgctcaccttttaagtggaagttctttcatccgcacac 191  Q
    |||||||  | ||    |||||||||||||||||||||||||||||  ||||  ||||| ||||||||||||||||    
T  6071127 acaatcttcccctcaaatgtgagtccatcaattcatcatgctcaccccttaaacggaagctctttcatccgcacac 6071052  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 8481941 - 8481853
Alignment:
Q  100 taacttacaattgcacacaacaatctatctct---gtgtgagtccatcaattcatcatgctcaccttttaagtggaagttctttcatcc 185  Q
    ||||| ||| ||||||||||||||||  | ||   ||||||||||||||||||| ||| |||||| |||||||| ||| ||||||||||    
T  8481941 taactcacacttgcacacaacaatctccccctcaagtgtgagtccatcaattcaccatactcaccatttaagtgaaagctctttcatcc 8481853  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 12092212 - 12092241
Alignment:
Q  132 gtgtgagtccatcaattcatcatgctcacc 161  Q
    ||||||||||||||||||||||||||||||    
T  12092212 gtgtgagtccatcaattcatcatgctcacc 12092241  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 10074408 - 10074528
Alignment:
Q  1 gacactacacttttacctaaaatcatatggcaattggtttatggatctcattacttataaaatgttcaacctaaacttttctaacagacatgggacttct 100  Q
    ||||| ||||| ||||| |||| | || ||||||  |||||||| ||   ||||||||||  ||||||||||  ||||||||| | ||  |||||| |||    
T  10074408 gacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgggacctct 10074507  T
Q  101 aacttacaattgcacacaaca 121  Q
    |||| ||| ||||||||||||    
T  10074508 aactcacacttgcacacaaca 10074528  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 33809143 - 33809215
Alignment:
Q  91 tgggacttctaacttacaattgcacacaacaatctatctctg---tgtgagtccatcaattcatcatgctcac 160  Q
    |||||| | ||||||||| |||||||||||||| | ||||||   ||||||||||||||||||||||||||||    
T  33809143 tgggacatataacttacacttgcacacaacaatttctctctgaagtgtgagtccatcaattcatcatgctcac 33809215  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 21504799 - 21504850
Alignment:
Q  133 tgtgagtccatcaattcatcatgctcaccttttaagtggaagttctttcatc 184  Q
    |||||||||||| ||||||||||||||||  | |||||||||||||||||||    
T  21504799 tgtgagtccatcgattcatcatgctcacccctcaagtggaagttctttcatc 21504850  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 39099932 - 39099988
Alignment:
Q  135 tgagtccatcaattcatcatgctcaccttttaagtggaagttctttcatccgcacac 191  Q
    |||||||||| ||||||||||||||||| | |||  | ||||||||||||| |||||    
T  39099932 tgagtccatcgattcatcatgctcacctctcaagctggagttctttcatccacacac 39099988  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 39818 - 39759
Alignment:
Q  132 gtgtgagtccatcaattcatcatgctcaccttttaagtggaagttctttcatccgcacac 191  Q
    |||||||| |||||||||||||||||||||  | ||| ||||| ||||||||| ||||||    
T  39818 gtgtgagttcatcaattcatcatgctcacccctcaagcggaagctctttcatctgcacac 39759  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 48243257 - 48243304
Alignment:
Q  132 gtgtgagtccatcaattcatcatgctcaccttttaagtggaagttctt 179  Q
    |||||| |||||||||||||||||||| || || ||||||||||||||    
T  48243257 gtgtgaatccatcaattcatcatgctcccccttcaagtggaagttctt 48243304  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 24600409 - 24600479
Alignment:
Q  51 ttacttataaaatgttcaacctaaacttttctaacagacatgggacttctaacttacaattgcacacaaca 121  Q
    |||||||||| |||||||||||  ||||||||| | || ||||||| | ||||| ||| ||||||||||||    
T  24600409 ttacttataatatgttcaacctttacttttctatccgatatgggacatataactcacacttgcacacaaca 24600479  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 7329251 - 7329199
Alignment:
Q  139 tccatcaattcatcatgctcaccttttaagtggaagttctttcatccgcacac 191  Q
    ||||||||||||||||| |  ||| ||||| ||||||||||||||||| ||||    
T  7329251 tccatcaattcatcatgtttgcctcttaagcggaagttctttcatccgaacac 7329199  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 3670040 - 3670011
Alignment:
Q  132 gtgtgagtccatcaattcatcatgctcacc 161  Q
    ||||||||||||||||||||||||||||||    
T  3670040 gtgtgagtccatcaattcatcatgctcacc 3670011  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 4154763 - 4154831
Alignment:
Q  53 acttataaaatgttcaacctaaacttttctaacagacatgggacttctaacttacaattgcacacaaca 121  Q
    ||||||||| ||||||||||  ||||||||| ||||  |||||| | ||||| ||| ||||||||||||    
T  4154763 acttataaagtgttcaacctccacttttctatcagatgtgggacatataactcacacttgcacacaaca 4154831  T

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