View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_low_46 (Length: 279)

Name: NF16798_low_46
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_low_46
NF16798_low_46
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-256)||(5955-6210)
[»] chr3 (12 HSPs)
chr3 (1-255)||(2807348-2807602)
chr3 (5-255)||(2797442-2797692)
chr3 (1-255)||(2855613-2855867)
chr3 (1-252)||(5412970-5413221)
chr3 (1-255)||(2759295-2759549)
chr3 (1-249)||(2749082-2749330)
chr3 (1-252)||(2838403-2838654)
chr3 (1-252)||(2769153-2769404)
chr3 (1-252)||(2818641-2818892)
chr3 (5-165)||(2790491-2790651)
chr3 (212-255)||(2790448-2790491)
chr3 (193-254)||(21945671-21945732)


Alignment Details
Target: scaffold0691 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 5955 - 6210
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5955 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 6054  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6055 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 6154  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaatt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6155 aaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaatt 6210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 2807602 - 2807348
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    |||||||||||||||||||||||||||||||| ||| | ||| |||||||||| |||| ||||| | |  ||||||||||||||||||||| ||||||||    
T  2807602 cctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaat 2807503  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||||||||||||||||| |  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  2807502 tgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaa 2807403  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaat 255  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  2807402 aaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaat 2807348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 2797692 - 2797442
Alignment:
Q  5 ttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaattgct 104  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||  |||||||  ||||||||| | |||||||| ||    
T  2797692 ttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcagtttcgctacaaaattcct 2797593  T
Q  105 ccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaaaaac 204  Q
    |||||||||| || | || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  2797592 ccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaac 2797493  T
Q  205 tagcttggcaagagtggttttccctatacctcccattcctaccactgaaat 255  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  2797492 tagcttggcaagagtggtttttcctagacctcccattccaaccactgaaat 2797442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 2855613 - 2855867
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    |||||||||||||||||||||||| |||| |||||| | ||||| ||||||||||||||| |||||  | |||||||||||||||||| |||||||||||    
T  2855613 cctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcagttccccgacaaaat 2855712  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||||||||||||||||| |  || |||||||| ||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  2855713 tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaa 2855812  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaat 255  Q
    ||| ||||||||||||||| ||||| |||||||| |||||||| |||||||||||    
T  2855813 aaattagcttggcaagagtagtttttcctataccccccattcccaccactgaaat 2855867  T

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Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5413221 - 5412970
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    |||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  5413221 cctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttccccgacaaaat 5413122  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||||||||||||||||| |  || |||||||| ||||||| |||||||||||  | |||||||| ||||||||| |||| || |||||||||||| ||||    
T  5413121 tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaa 5413022  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccactga 252  Q
    ||||||||||||||||||||||||| ||||  || |||||||||||||||||    
T  5413021 aaactagcttggcaagagtggtttttcctaggccccccattcctaccactga 5412970  T

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Target: chr3; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 2759549 - 2759295
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    |||||||||||  ||||||| ||| || ||| |||| | |||| |||||||||||||||||||| | |  ||||||||||||||||||||| ||||||||    
T  2759549 cctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctgacaaaat 2759450  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||| ||||||| ||||| ||||| |||||||| ||||||| |||||||||| ||||||||||  |||||||||| |||||||||||||||||||||||||    
T  2759449 tgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaa 2759350  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaat 255  Q
    ||||||||||||||||||||||||| || | ||| ||||||||||||||||||||    
T  2759349 aaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaat 2759295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2749330 - 2749082
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||| |||   |||||| |||    
T  2749330 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 2749231  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||||||||||||||||| |  || |||||||| ||||| | ||||||||||| || |||||||||||||||||| |||| || |||||||| ||| ||||    
T  2749230 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 2749131  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccac 249  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  2749130 aaactagcttggcaagagtggtttttcctaggcctcccattcctaccac 2749082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2838403 - 2838654
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    |||||||||||| ||||||||||||||||||  ||| | ||||| ||||||| ||||||| ||||| || |||||||||||||||||| |||||||||||    
T  2838403 cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat 2838502  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||||||||||||||||| |  || |||||||| ||||||| ||||||||||| || |||||||  ||||||||| | || ||||||||||||||| ||||    
T  2838503 tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa 2838602  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccactga 252  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||    
T  2838603 aaactagcttggcaagagtggtttttcctagaccccccattcctaccactga 2838654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2769404 - 2769153
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    |||||||||||| ||||||| ||| || ||||| |  | |||| |||||||||||||||||||||| |   | ||||| |||||||||||| ||||||||    
T  2769404 cctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcagtttcctgacaaaat 2769305  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||||||||||| ||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| | ||  ||||||||||||||||||     
T  2769304 tgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcat 2769205  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccactga 252  Q
    ||||||| ||||||||||||||||| |||| ||| |||||||||||||||||    
T  2769204 aaactagtttggcaagagtggtttttcctagaccccccattcctaccactga 2769153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2818892 - 2818641
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 100  Q
    |||||||||||  ||||||| ||| || |||||||| | | || |||||||||||||| |||| || |   ||  ||||||||||| |||| || |||||    
T  2818892 cctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcctgataaaat 2818793  T
Q  101 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 200  Q
    ||||||||||| ||||| ||||| |||||||| ||||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2818792 tgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaa 2818693  T
Q  201 aaactagcttggcaagagtggttttccctatacctcccattcctaccactga 252  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||    
T  2818692 aaactagcttggcaagagtggtttttcctagaccccccattcctaccactga 2818641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 2790651 - 2790491
Alignment:
Q  5 ttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaattgct 104  Q
    ||||||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||||| |||  ||||||| |||||||||| | |||||||| ||    
T  2790651 ttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttcagtttcgctacaaaattcct 2790552  T
Q  105 ccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacg 165  Q
    |||||||||| || | || ||| ||||||||| ||| ||||||||| | ||||||||||||    
T  2790551 ccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagcacg 2790491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 2790491 - 2790448
Alignment:
Q  212 gcaagagtggttttccctatacctcccattcctaccactgaaat 255  Q
    |||||||||||||| |||| |||||||||||| |||||||||||    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaat 2790448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 21945732 - 21945671
Alignment:
Q  193 gctgtcaaaaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaa 254  Q
    |||||||||||||  |||||| ||||||||||| |||   ||||||||||||||||| ||||    
T  21945732 gctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaa 21945671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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