View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_48 (Length: 265)
Name: NF16798_low_48
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_48 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 42018556 - 42018306
Alignment:
| Q |
15 |
atcagtaaagcacacaaattcacattaacgattgagctcccactcgttccctgcatgtccaataaggattgatctaaataacagcagaagcatcaaaaac |
114 |
Q |
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| T |
42018556 |
atcagtaaagcacacaaattcacattaacgattgagctcccactcgttccctgcatgtccaataaggattgatctaaataacagcagaagcatcaaaaac |
42018457 |
T |
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| Q |
115 |
atgaagctgatataaatgtaaatatgttaaagcttaagcaaactgacctaaataataataacactgacaaagttgattcctcctatgtcaattgtttgta |
214 |
Q |
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| T |
42018456 |
atgaagctgatataaatgtaaatatgttaaagcttaagcaaactgacctaaataataataacactgacaaagttgattcctcctatgtcaattgtttgta |
42018357 |
T |
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| Q |
215 |
acagttataggcgatagtgaccgatacagcagcacagacaacagcaagagc |
265 |
Q |
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| T |
42018356 |
gcagttataggcgatagtgaccgatacagcagcacagacaacagcaagagc |
42018306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 1251776 - 1251526
Alignment:
| Q |
15 |
atcagtaaagcacacaaattcacattaacgattgagctcccactcgttccctgcatgtccaataaggattgatctaaataacagcagaagcatcaaaaac |
114 |
Q |
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| T |
1251776 |
atcagtaaagcacacaaattcacattaacgattgagctcccactcgttccctgcatgtccaataaggattgatctaaataacagcagaagcatcaaaaac |
1251677 |
T |
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| Q |
115 |
atgaagctgatataaatgtaaatatgttaaagcttaagcaaactgacctaaataataataacactgacaaagttgattcctcctatgtcaattgtttgta |
214 |
Q |
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| T |
1251676 |
atgaagctgatataaatgtaaatatgttaaagcttaagcaaactgacctaaataataataacactgacaaagttgattcctcctatgtcaattgtttgca |
1251577 |
T |
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| Q |
215 |
acagttataggcgatagtgaccgatacagcagcacagacaacagcaagagc |
265 |
Q |
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| T |
1251576 |
gcagttataggcgatagtgaccgatacagcagcacagacaacagcaagagc |
1251526 |
T |
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