View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_49 (Length: 265)
Name: NF16798_low_49
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 31421329 - 31421081
Alignment:
| Q |
1 |
caaaaaacgtgaatagcaacagagagaggtctccggcgtagcagacagccgtgtacggcgtagcagtcagatctggaacagattgggacaaactaaaacg |
100 |
Q |
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| T |
31421329 |
caaaaaacgtgaatagcaacagagagaggtctccggcgtagcagacagccgtgtacggtgtagcagtcaaatctggaacagatcgggacaaactaaaacg |
31421230 |
T |
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| Q |
101 |
ggaccggatcgaaaacattgaaaccatcaaggaaaagaaccaatagaagaagaagaaaccaccacaacaccagaatcgacgcggcggcgtgaccctctta |
200 |
Q |
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| T |
31421229 |
ggaccggatcgaaaacattgaaaccctcaaggaaaagaaccaatagaagaagaagaaaccaccacaacaccagaatcgacgcggcggcgtgaccctctta |
31421130 |
T |
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| Q |
201 |
ggaggtggatgaaggtggtgcag-cgcaagagccgcgcacaccacccaa |
248 |
Q |
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| T |
31421129 |
aaaggtggatgaaggtggtgcagccgcaagaggcgcgcgcaccacccaa |
31421081 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 17820775 - 17820857
Alignment:
| Q |
142 |
aatagaagaagaagaaaccaccacaacaccagaatcgacgcggcggcgtgaccctcttaggaggtggatgaaggtggtgcagc |
224 |
Q |
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| T |
17820775 |
aatagaaaacgaagcaaccaccactgcaccaaatccgacgcgacggcgtgaccctttcaggaggtggatggaggtggtgcagc |
17820857 |
T |
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