View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16798_low_53 (Length: 253)
Name: NF16798_low_53
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_53 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 34289436 - 34289250
Alignment:
| Q |
1 |
cattggtatttatatttttatataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaagtctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34289436 |
cattggtatttatatttttatataagaaaaaattatattaaagtgccaacattacattggtttgagtgtaacaaacttaaatttcttataaaaagtctta |
34289337 |
T |
|
| Q |
101 |
agttcggatcttgcgaatggagaaaatgtcgtttcgaaactcggtgttgaattaggttagtgttataattaaggtctgtaatactaa |
187 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || | || ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
34289336 |
agttcgaatcttgcgaatggagaaaatgtcgtttggagagtctgtgttgaattaagttagtgttataattaaggtctgtaacactaa |
34289250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 34301819 - 34301716
Alignment:
| Q |
1 |
cattggtatttatatttttatataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaagtctta |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| | || || |||||| |||||||||| ||||||||| ||||||| |||| |||||||||| |
|
|
| T |
34301819 |
cattcgtatttatatttttatataagaaaaa-ttatagtgaaatggcaacattgcattggtttgcgtgtaacaagcttgaatcgcttaagaaaagtctta |
34301721 |
T |
|
| Q |
101 |
agttc |
105 |
Q |
| |
|
||||| |
|
|
| T |
34301720 |
agttc |
34301716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 34289252 - 34289212
Alignment:
| Q |
205 |
taattctccttccaatccctcatgtaattattcttttcact |
245 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34289252 |
taattctccttcaaatccctcatgtaattattcttttcact |
34289212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University