View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16798_low_55 (Length: 250)
Name: NF16798_low_55
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_55 |
 | |
|
| [»] scaffold0204 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 32113657 - 32113448
Alignment:
| Q |
31 |
cacatttttaaatatgaggaatgagatctttgaggttcgaacctcgatctatacatatattatacaatatctttattaattgagttaagttcgcagaaac |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32113657 |
cacatttttaaatatgaggaatgagatctttgaggttcgaatctcgatccatacatatattatacaatatctttattaattgagttaagttcgcggaaac |
32113558 |
T |
|
| Q |
131 |
aataccctaaataatttatttaggtcatttatttataatttcacgttaaaaatgaattatgaaaagttattttttatctttagttgtacgtccccattca |
230 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32113557 |
aataccccaaataatttatttaggtcatttatttataattttacgttaaaaatgaattatgaaaagttattttttatctttagttgtacgtccccattca |
32113458 |
T |
|
| Q |
231 |
ttcattcatc |
240 |
Q |
| |
|
|||||||||| |
|
|
| T |
32113457 |
ttcattcatc |
32113448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 24607943 - 24607893
Alignment:
| Q |
64 |
ggttcgaacctcgatctatacatatattatacaatatctttattaattgag |
114 |
Q |
| |
|
||||| |||||||| || | ||||||||||||||||||||||| ||||||| |
|
|
| T |
24607943 |
ggttcaaacctcgaactctgcatatattatacaatatctttatcaattgag |
24607893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 16209 - 16153
Alignment:
| Q |
66 |
ttcgaacctcgatctatacatatattatacaatatctttattaattgagttaagttc |
122 |
Q |
| |
|
|||||||||||| || |||||||||||| || | || ||||||| |||||||||||| |
|
|
| T |
16209 |
ttcgaacctcgaactttacatatattatgcattgtccttattaaatgagttaagttc |
16153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 12510428 - 12510496
Alignment:
| Q |
50 |
aatgagatctttgaggttcgaacctcgatctatacatatattatacaatatctttattaattgagttaa |
118 |
Q |
| |
|
|||||||| | |||||||||||| ||| | ||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
12510428 |
aatgagatgtctgaggttcgaactccgacccatacatatattatgcaatgtccctattaattgagttaa |
12510496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University