View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_56 (Length: 238)
Name: NF16798_low_56
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 24358919 - 24358732
Alignment:
| Q |
35 |
ggattaatgtaaatgttgtttttcaacttaccagctgactatctgctatatggttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaatt |
134 |
Q |
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| T |
24358919 |
ggattaatgtaaatgttgtttttcaacttaccagctgactatctgctatatggttaggttttatgagaattgtgaaaaaaggattgtttgagatgaaatt |
24358820 |
T |
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| Q |
135 |
ttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttagaagtcttctcatcatcacctgcatatatg |
222 |
Q |
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| T |
24358819 |
ttgagctactttctgagctctaacatcctttggccaatttattgatgaagttcttttagtagtcttctcatcatcacctgcatatatg |
24358732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 24370175 - 24370050
Alignment:
| Q |
97 |
atgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttagaag |
196 |
Q |
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| T |
24370175 |
atgagaattgtgaaaaatggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattcattgatgaagttcttttagtag |
24370076 |
T |
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| Q |
197 |
tcttctcatcatcacctgcatatatg |
222 |
Q |
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| T |
24370075 |
tcttctcatcatcacctgcatatatg |
24370050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 24364401 - 24364529
Alignment:
| Q |
94 |
tttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttag |
193 |
Q |
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| T |
24364401 |
tttatgagaactgtaaagaaaggattgcatgagatgaaattttgagctacttcctgagctctagcattcttcggccagtttattgatgaagttcttttag |
24364500 |
T |
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| Q |
194 |
aagtcttctcatcatcacctgcatatatg |
222 |
Q |
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| T |
24364501 |
tagtcttctcatgatctcctgcatatatg |
24364529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 24355813 - 24355633
Alignment:
| Q |
37 |
attaatgtaaatgttgtttttcaacttaccagctgactatctgctatatggttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaatttt |
136 |
Q |
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| T |
24355813 |
attactgtaaatgttgtgtttgaccttaccagccgatttgctaccaaatgattaggcttgatgagaattgtgaaaaaaggattgcatgagatgaaatttt |
24355714 |
T |
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| Q |
137 |
gagcaacttcctgagctctaacatcct-ttggccaattgattgatgaagttcttttagaagtcttctcatcatcacctgcatatatg |
222 |
Q |
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| T |
24355713 |
gagctacttcctgagctctagc-tcctcttggccaa-----tgatgaagttcttttagcagttttcttaatctcacctgcatatatg |
24355633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 24346711 - 24346558
Alignment:
| Q |
37 |
attaatgtaaatgttgtttttcaacttaccagctgactatctgctatatggttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaatttt |
136 |
Q |
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||||||||||||||||| ||| | ||||||| | || | ||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
24346711 |
attaatgtaaatgttgtgtttaatcttaccacccgattttctgctagatgagtagggtttatgagaattgtgaaaaaaggattggttgagatgaatttta |
24346612 |
T |
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| Q |
137 |
gagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttt |
190 |
Q |
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| T |
24346611 |
aagctacttcctgagctctagctccctttggccaattccatgatgtagttcttt |
24346558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 24362693 - 24362495
Alignment:
| Q |
26 |
tgcaagaatggattaatgtaaatgtt--gtttttcaacttaccagctgactatctgctatatggttaggttttatgagaattgtgaaaaaaggattgcat |
123 |
Q |
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|||| ||||| ||||||| ||||||| || ||| | ||||||||| || | ||| | | ||| ||||| |||||||||||||||||||||||||||| | |
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| T |
24362693 |
tgcatgaatgaattaatgcaaatgttttgtgtttgaccttaccagccgagtttctaccagatgattaggctttatgagaattgtgaaaaaaggattgctt |
24362594 |
T |
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| Q |
124 |
gagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttagaagtcttctcatcatcacctgcatatatg |
222 |
Q |
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| T |
24362593 |
gagatgaattttgcagctacttctcgagctctagctcccataggccaattcaatgatgtagttctttcagtagtcttcttaatctcacctgcatatatg |
24362495 |
T |
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