View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_low_58 (Length: 235)

Name: NF16798_low_58
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_low_58
NF16798_low_58
[»] chr4 (43 HSPs)
chr4 (1-101)||(44967830-44967930)
chr4 (9-101)||(6542181-6542271)
chr4 (6-78)||(27416989-27417060)
chr4 (9-101)||(33989920-33990012)
chr4 (6-97)||(26175642-26175731)
chr4 (9-100)||(26699444-26699535)
chr4 (6-97)||(36463395-36463484)
chr4 (7-97)||(48893644-48893732)
chr4 (6-78)||(9927482-9927553)
chr4 (9-89)||(33089954-33090034)
chr4 (7-90)||(12073466-12073548)
chr4 (6-97)||(12743931-12744020)
chr4 (6-97)||(12745320-12745409)
chr4 (6-97)||(50262706-50262796)
chr4 (6-97)||(54883093-54883182)
chr4 (6-95)||(379453-379541)
chr4 (9-90)||(12119615-12119695)
chr4 (9-90)||(46703577-46703657)
chr4 (9-97)||(2209790-2209877)
chr4 (6-78)||(8665481-8665552)
chr4 (6-70)||(37740698-37740761)
chr4 (6-78)||(54199930-54200001)
chr4 (9-97)||(56178642-56178729)
chr4 (6-97)||(5429752-5429841)
chr4 (6-97)||(12739556-12739645)
chr4 (7-78)||(26364310-26364380)
chr4 (6-97)||(29254567-29254656)
chr4 (7-78)||(50673871-50673941)
chr4 (28-78)||(5871914-5871964)
chr4 (7-101)||(31474225-31474317)
chr4 (10-76)||(34570440-34570505)
chr4 (7-97)||(46147397-46147485)
chr4 (9-78)||(5370107-5370175)
chr4 (6-71)||(12744078-12744142)
chr4 (6-71)||(12745467-12745531)
chr4 (9-101)||(22882753-22882843)
chr4 (9-101)||(22934417-22934507)
chr4 (6-75)||(52095389-52095457)
chr4 (9-101)||(4588035-4588125)
chr4 (6-78)||(8648212-8648283)
chr4 (9-97)||(41964492-41964578)
chr4 (1-97)||(47038417-47038511)
chr4 (9-101)||(51337140-51337230)
[»] chr5 (24 HSPs)
chr5 (9-101)||(33906031-33906123)
chr5 (9-101)||(316838-316930)
chr5 (6-97)||(28278389-28278478)
chr5 (6-97)||(32636897-32636986)
chr5 (6-95)||(538098-538185)
chr5 (6-97)||(13488276-13488365)
chr5 (6-101)||(16452153-16452246)
chr5 (6-97)||(42428436-42428525)
chr5 (6-68)||(39468583-39468644)
chr5 (7-97)||(40147335-40147423)
chr5 (9-97)||(13239827-13239914)
chr5 (6-78)||(28750679-28750750)
chr5 (9-97)||(37439217-37439304)
chr5 (6-78)||(42426259-42426330)
chr5 (6-97)||(213538-213628)
chr5 (6-97)||(533842-533931)
chr5 (6-97)||(5058118-5058207)
chr5 (9-95)||(30682930-30683016)
chr5 (43-100)||(4160708-4160765)
chr5 (28-97)||(19806457-19806525)
chr5 (9-78)||(25412836-25412904)
chr5 (9-97)||(27637618-27637704)
chr5 (1-97)||(31183039-31183133)
chr5 (6-78)||(33831753-33831824)
[»] chr2 (22 HSPs)
chr2 (9-101)||(33648247-33648339)
chr2 (9-95)||(24398133-24398219)
chr2 (7-97)||(17057375-17057463)
chr2 (7-97)||(17085358-17085446)
chr2 (6-97)||(723750-723839)
chr2 (6-97)||(29867942-29868031)
chr2 (7-97)||(36773636-36773724)
chr2 (9-90)||(28672006-28672087)
chr2 (8-97)||(45727004-45727091)
chr2 (9-97)||(32289639-32289727)
chr2 (6-78)||(33162474-33162545)
chr2 (9-97)||(36988081-36988168)
chr2 (9-96)||(2334424-2334510)
chr2 (6-97)||(35446890-35446979)
chr2 (6-97)||(36318015-36318104)
chr2 (6-97)||(38312313-38312402)
chr2 (9-78)||(6595030-6595098)
chr2 (28-97)||(34139776-34139844)
chr2 (28-97)||(39284930-39284998)
chr2 (6-78)||(1631756-1631827)
chr2 (9-101)||(17490150-17490240)
chr2 (6-78)||(42362425-42362496)
[»] scaffold0219 (1 HSPs)
scaffold0219 (7-90)||(27454-27537)
[»] chr8 (22 HSPs)
chr8 (6-97)||(40221818-40221907)
chr8 (6-97)||(33352223-33352312)
chr8 (6-97)||(40321153-40321242)
chr8 (6-97)||(5689344-5689433)
chr8 (9-100)||(7597690-7597781)
chr8 (6-97)||(15212859-15212948)
chr8 (6-97)||(18655473-18655562)
chr8 (7-101)||(3303672-3303764)
chr8 (7-97)||(43036497-43036585)
chr8 (6-78)||(19491723-19491794)
chr8 (6-70)||(30143413-30143476)
chr8 (6-97)||(10930205-10930294)
chr8 (6-97)||(27811351-27811440)
chr8 (6-97)||(42434997-42435086)
chr8 (28-97)||(6599066-6599134)
chr8 (28-97)||(6674519-6674587)
chr8 (6-70)||(4731731-4731794)
chr8 (13-85)||(11712017-11712089)
chr8 (6-78)||(18141893-18141964)
chr8 (9-97)||(31218333-31218420)
chr8 (9-97)||(34256512-34256599)
chr8 (9-97)||(42498270-42498357)
[»] chr1 (30 HSPs)
chr1 (6-97)||(47255345-47255435)
chr1 (6-97)||(28220232-28220321)
chr1 (6-97)||(28265560-28265649)
chr1 (9-97)||(47115248-47115335)
chr1 (6-70)||(50167207-50167270)
chr1 (6-97)||(3156938-3157027)
chr1 (6-97)||(13547095-13547184)
chr1 (6-97)||(13549006-13549095)
chr1 (6-97)||(28223427-28223516)
chr1 (7-97)||(42297980-42298069)
chr1 (7-97)||(45644360-45644448)
chr1 (9-97)||(37168374-37168460)
chr1 (6-78)||(41360987-41361058)
chr1 (6-78)||(49918423-49918494)
chr1 (6-97)||(834173-834262)
chr1 (7-78)||(1833596-1833666)
chr1 (6-97)||(13659342-13659431)
chr1 (10-97)||(28242382-28242467)
chr1 (6-97)||(31659311-31659400)
chr1 (7-78)||(44455234-44455304)
chr1 (7-97)||(8550792-8550881)
chr1 (8-78)||(19754570-19754639)
chr1 (11-101)||(46064996-46065084)
chr1 (9-90)||(6808528-6808609)
chr1 (1-101)||(22079383-22079484)
chr1 (6-67)||(37559903-37559963)
chr1 (6-78)||(11348771-11348842)
chr1 (9-99)||(13938213-13938302)
chr1 (6-78)||(31925731-31925802)
chr1 (10-70)||(37503589-37503648)
[»] chr6 (19 HSPs)
chr6 (7-97)||(5043701-5043790)
chr6 (6-97)||(603094-603183)
chr6 (6-97)||(21589004-21589093)
chr6 (6-97)||(21593737-21593826)
chr6 (1-97)||(2171537-2171632)
chr6 (6-78)||(28137432-28137503)
chr6 (6-97)||(9183037-9183126)
chr6 (9-95)||(5409076-5409161)
chr6 (9-95)||(5413401-5413486)
chr6 (9-95)||(26800664-26800748)
chr6 (7-97)||(33211191-33211279)
chr6 (9-78)||(3808732-3808800)
chr6 (9-78)||(5406224-5406292)
chr6 (9-78)||(5410549-5410617)
chr6 (9-97)||(412177-412265)
chr6 (6-78)||(2972963-2973034)
chr6 (6-78)||(3038927-3038998)
chr6 (6-78)||(26830147-26830218)
chr6 (9-97)||(31404680-31404767)
[»] chr7 (36 HSPs)
chr7 (9-97)||(8359321-8359408)
chr7 (6-97)||(18126717-18126806)
chr7 (9-95)||(3904624-3904709)
chr7 (6-78)||(1113730-1113801)
chr7 (6-78)||(48491652-48491723)
chr7 (6-97)||(6432044-6432133)
chr7 (7-78)||(8153416-8153486)
chr7 (6-97)||(14069839-14069928)
chr7 (6-97)||(14379867-14379956)
chr7 (9-100)||(22328392-22328483)
chr7 (6-97)||(27347890-27347979)
chr7 (6-97)||(32358060-32358149)
chr7 (6-97)||(41317440-41317529)
chr7 (6-97)||(43864317-43864406)
chr7 (6-101)||(48489504-48489597)
chr7 (6-95)||(30024740-30024827)
chr7 (13-101)||(4253530-4253617)
chr7 (9-101)||(18396393-18396485)
chr7 (6-66)||(26417389-26417448)
chr7 (6-78)||(36146432-36146503)
chr7 (7-78)||(2360996-2361066)
chr7 (7-78)||(3259069-3259139)
chr7 (6-97)||(22270046-22270135)
chr7 (7-78)||(24525526-24525596)
chr7 (7-101)||(31518976-31519069)
chr7 (6-97)||(31732975-31733064)
chr7 (6-97)||(41649017-41649106)
chr7 (6-96)||(25615926-25616015)
chr7 (7-97)||(34310721-34310810)
chr7 (6-62)||(4508746-4508801)
chr7 (4-68)||(5116675-5116739)
chr7 (6-78)||(6359976-6360047)
chr7 (9-97)||(23555116-23555203)
chr7 (9-97)||(29991129-29991216)
chr7 (9-97)||(35853990-35854077)
chr7 (6-66)||(47673979-47674038)
[»] scaffold0236 (1 HSPs)
scaffold0236 (1-101)||(10556-10655)
[»] chr3 (25 HSPs)
chr3 (1-97)||(40735450-40735545)
chr3 (6-78)||(29810941-29811012)
chr3 (7-95)||(32891178-32891264)
chr3 (6-90)||(46860547-46860630)
chr3 (6-97)||(29196392-29196481)
chr3 (6-97)||(44331618-44331707)
chr3 (8-78)||(30236200-30236269)
chr3 (7-97)||(34491286-34491374)
chr3 (7-97)||(40913367-40913455)
chr3 (6-78)||(760920-760991)
chr3 (6-78)||(6095623-6095694)
chr3 (9-97)||(7762341-7762428)
chr3 (6-78)||(46173430-46173501)
chr3 (9-97)||(49199474-49199561)
chr3 (6-97)||(9581355-9581445)
chr3 (6-97)||(16499102-16499191)
chr3 (6-97)||(29813136-29813225)
chr3 (1-63)||(33191899-33191960)
chr3 (7-97)||(40734572-40734660)
chr3 (1-63)||(51352150-51352211)
chr3 (8-90)||(55301984-55302065)
chr3 (9-99)||(4055767-4055856)
chr3 (9-97)||(19683894-19683981)
chr3 (9-97)||(45095239-45095326)
chr3 (6-70)||(54593777-54593840)
[»] scaffold0066 (1 HSPs)
scaffold0066 (6-97)||(20421-20510)
[»] scaffold0006 (1 HSPs)
scaffold0006 (6-97)||(149103-149192)
[»] scaffold0286 (1 HSPs)
scaffold0286 (7-97)||(11631-11720)
[»] scaffold0491 (2 HSPs)
scaffold0491 (9-97)||(8740-8828)
scaffold0491 (9-97)||(11166-11254)
[»] scaffold0176 (1 HSPs)
scaffold0176 (7-78)||(18028-18097)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-97)||(434609-434696)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 44967930 - 44967830
Alignment:
Q  1 tgtaaccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44967930 tgtaaccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataagtcactgttggaccgacctgggtaaa 44967831  T
Q  101 c 101  Q
    |    
T  44967830 c 44967830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 6542271 - 6542181
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||||||| || |||||||| ||| |||| ||| ||||||||||||||||||  |||||||  |||||||||| ||||||||||    
T  6542271 tttgtatctctttgtaagaa-ctcgttgatagtggattggagagatcaatctctcccccagggtaggtca-agttggaccgaactgggtaaac 6542181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 27417060 - 27416989
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||||||||| ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  27417060 ccatttgtatctctttgtaaaaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca 27416989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 33989920 - 33990012
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    |||||||||||||||||| |||||||| | ||| |||| ||| ||||||||||||| ||||| ||||||| | |||||  || ||||||||||    
T  33989920 tttgtatctctttgtaaataactcgttaatagtggattggagagatcaatctctccaccagagtaggtcattcttggattgaactgggtaaac 33990012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 26175731 - 26175642
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  26175731 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 26175642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 26699535 - 26699444
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaa 100  Q
    |||||||||||||||||| ||||| || | | | |||| ||| |||||||||||  |||||| ||||||| ||||||||||| |||||||||    
T  26699535 tttgtatctctttgtaaagaactcatttataatggattggagagatcaatctctatcccagagtaggtcattgttggaccgaactgggtaaa 26699444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 36463484 - 36463395
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  36463484 ccatttgtatctctttgtaagaa-ctctttgacagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 36463395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 48893732 - 48893644
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  48893732 catttgtatctctttgtaagaa-ctctttgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 48893644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 9927553 - 9927482
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  9927553 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca 9927482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 33089954 - 33090034
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccg 89  Q
    ||||||||||| |||||| ||||| |||| ||| |||||||| ||||||||||||| | ||| ||||| | ||||||||||    
T  33089954 tttgtatctctctgtaaagaactcattgatagtggattagagagatcaatctctcctctagagtaggttattgttggaccg 33090034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 12073466 - 12073548
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccga 90  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||  ||||| ||||||| |||||||||||    
T  12073466 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcttccagagtaggtcattgttggaccga 12073548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 12744020 - 12743931
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  12744020 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccatattaggtca-agttggaccgaactgggt 12743931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 12745409 - 12745320
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  12745409 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccatattaggtca-agttggaccgaactgggt 12745320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 50262796 - 50262706
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| |||  |||||||| ||| ||||| ||||||| ||||||||||| ||||||    
T  50262796 ccatttgtatctctttgtaagaa-ctcattgatagttgattggagatatcaatctttcctccagagtaggtcattgttggaccgaactgggt 50262706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 54883093 - 54883182
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||||||||||||||||| ||||| || ||||  |||||||||| ||||||    
T  54883093 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagggatcaatctctcctccagattaagtca-agttggaccgaactgggt 54883182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 379453 - 379541
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    ||||||||||| |||||||| || ||  |||| ||| |||| ||| ||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  379453 ccatttgtatcgctttgtaagaa-ctaattgatagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgg 379541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 12119615 - 12119695
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccga 90  Q
    |||||||||||||||||| ||||| || | ||| |||| ||| ||||||||||| ||| ||| ||||||| |||||||||||    
T  12119615 tttgtatctctttgtaaagaactcatttatagtggattggagagatcaatctct-cccaagagtaggtcattgttggaccga 12119695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 46703577 - 46703657
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccga 90  Q
    ||||||||||||||||| || ||| || | ||| |||| ||| ||||||||||||| ||||| ||||||| |||||||||||    
T  46703577 tttgtatctctttgtaagaa-ctcatttatagtggattggagagatcaatctctcctccagagtaggtcattgttggaccga 46703657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 2209790 - 2209877
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||| || ||||| |||| ||| |||| ||| ||| ||||||||| ||||| |||||||  |||||||||| ||||||    
T  2209790 tttgtatctctttgt-aagaactcattgatagtggattggagagattaatctctcctccagagtaggtcatggttggaccgaactgggt 2209877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 8665481 - 8665552
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  8665481 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca 8665552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 37740698 - 37740761
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccaga 70  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| |||||||||||||||||||    
T  37740698 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccaga 37740761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 54200001 - 54199930
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| |||  ||||||| ||||| ||||||||||||| |||||||    
T  54200001 ccatttgtatctctttgtaagaa-ctcattgatagtgaattagagagatcattctctcccccagattaggtca 54199930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 56178729 - 56178642
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  56178729 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 56178642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 5429752 - 5429841
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||| ||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| ||||| |  |||||||||| ||||||    
T  5429752 ccatttgtatctatttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtta-agttggaccgaactgggt 5429841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 12739645 - 12739556
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||| ||||||  || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  12739645 ccatttgtatctatttgtatgaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 12739556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 26364310 - 26364380
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||||| || ||| || | ||| |||| ||| ||||||||||||||||||| |||||||    
T  26364310 catttgtatctctttgtaagaa-ctcattaatagtggattggagagatcaatctctcccccagattaggtca 26364380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 29254567 - 29254656
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||| ||||||||||| || |||||||| ||| |||| ||| |||||||||||| |||| | |||||||  |||||||||| ||||||    
T  29254567 ccatttgtgtctctttgtaagaa-ctcgttgatagtggattggagagatcaatctctctcccaaattaggtca-agttggaccgaactgggt 29254656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 50673941 - 50673871
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  50673941 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca 50673871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 5871914 - 5871964
Alignment:
Q  28 aactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||| |||| ||| |||||||| ||||||||||||||||||| |||||||    
T  5871914 aactctttgatagtggattagagagatcaatctctcccccagattaggtca 5871964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 31474225 - 31474317
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||||||| || ||||| |||| ||| |||| ||| ||| ||||||||| ||||| ||| |||  |||||||||| ||||||||||    
T  31474225 catttgtatctctttgt-aagaactcattgatagttgattggagagataaatctctccaccagagtagatca-agttggaccgaactgggtaaac 31474317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 34570505 - 34570440
Alignment:
Q  10 ttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggt 76  Q
    |||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||    
T  34570505 ttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggt 34570440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 46147485 - 46147397
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| |||  |||||||||||||||| | |||||||  |||||||||| ||||||    
T  46147485 catttgtatctctttgtaagaa-ctctttgatagtggattggagacatcaatctctcccccaaattaggtca-agttggaccgaactgggt 46147397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 5370175 - 5370107
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||| || ||| |||| ||| || ||||| ||||||||||||| ||||| |||||||    
T  5370175 tttgtatctctttgtaagaa-ctcattgatagtggactagagagatcaatctctcctccagagtaggtca 5370107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 12744142 - 12744078
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaa 71  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||| ||||||||    
T  12744142 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctcttccccagaa 12744078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 12745531 - 12745467
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaa 71  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||| ||||||||    
T  12745531 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctcttccccagaa 12745467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 22882843 - 22882753
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    |||||||||||| ||||| ||||| |||  ||| ||||||||  |||||||||  |||| || ||||||| ||||||||||| |||| |||||    
T  22882843 tttgtatctcttcgtaaagaactcattggtagtggattagagaaatcaatctc--ccccggagtaggtcattgttggaccgaactggataaac 22882753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 22934507 - 22934417
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    |||||||||||| ||||| ||||| |||  ||| ||||||||  |||||||||  |||| || ||||||| ||||||||||| |||| |||||    
T  22934507 tttgtatctcttcgtaaagaactcattggtagtggattagagaaatcaatctc--ccccggagtaggtcattgttggaccgaactggataaac 22934417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 52095457 - 52095389
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaatagg 75  Q
    |||||||||||||||||||| ||| || |||| ||| |||| ||| ||||||||||||| ||||| ||||    
T  52095457 ccatttgtatctctttgtaagaaa-tctttgatagtggattggagagatcaatctctcctccagagtagg 52095389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 4588035 - 4588125
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| || |||||||||||||| ||||||| |  |||||||| | ||||||||||    
T  4588035 tttgtatctctttgtaagaa-ctcattgatagtggattggagagaacaatctctcccccataataggtga-agttggaccaaactgggtaaac 4588125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 8648212 - 8648283
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||||| |||| | | |||| ||| ||||||||||||| ||||| |||||||    
T  8648212 ccatttgtatctctttgt-aagaactcattgatattggattggagagatcaatctctcctccagagtaggtca 8648283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 41964492 - 41964578
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  41964492 tttgtatccctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 41964578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 47038511 - 47038417
Alignment:
Q  1 tgtaaccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||| ||||||||||| |||||||  | ||| |||| ||| |||| ||| ||||||||||||||||||| || ||||  |||||||||| ||||||    
T  47038511 tgtaatcatttgtatctgtttgtaagga-ctcattgatagtggattggagagatcaatctctcccccagagtaagtca-agttggaccgaactgggt 47038417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 51337140 - 51337230
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||| ||| || ||| |||| |||  ||||||| |||||||||||||| || | |||||||  |||||||||| ||||||||||    
T  51337140 tttgtatctctttttaagaa-ctcattgatagtgtattagagagatcaatctctcccacacattaggtca-agttggaccgaactgggtaaac 51337230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 33906123 - 33906031
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    |||||||||||||||||| ||||| |||| |||||||| ||  ||||||||||| ||| ||| ||||||| ||||||||||| ||||||||||    
T  33906123 tttgtatctctttgtaaagaactcattgatagtagattggaaagatcaatctcttccctagagtaggtcaatgttggaccgagctgggtaaac 33906031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 316838 - 316930
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    |||||||||||||||||| ||||| |||| | | |||  ||||||||||||||||||| ||| ||||||| ||||||||||| || |||||||    
T  316838 tttgtatctctttgtaaagaactcattgataatggatcggagggatcaatctctcccctagagtaggtcattgttggaccgaacttggtaaac 316930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 28278389 - 28278478
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||||||| ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  28278389 ccatttgtatctctttgtaaaaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 28278478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 32636897 - 32636986
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  32636897 ccatttgtatctctttgtaagaa-ctctttgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 32636986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 538098 - 538185
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    |||||||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||    
T  538098 ccatttgtatctctttgtaagaa-ctcattgatagtagattggagagatcaatctctcccccatattaggtca-agttggaccgaactgg 538185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 13488276 - 13488365
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||| ||| |||||||  |||||||||| ||||||    
T  13488276 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctccccgagattaggtca-agttggaccgaactgggt 13488365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 16452153 - 16452246
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    |||||||||||||||||| || ||||| || | ||| |||| ||| ||| ||||||||||||||| |||||||  |||||||||| ||||||||||    
T  16452153 ccatttgtatctctttgt-aagaactcattcatagtggattggagagataaatctctcccccagagtaggtca-agttggaccgaactgggtaaac 16452246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 42428525 - 42428436
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  42428525 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccatattaggtca-agttggaccgaactgggt 42428436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 39468644 - 39468583
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctccccca 68  Q
    |||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||||||||||    
T  39468644 ccatttgtatctctttgtaagaa-ctcattgatagtggattagagagatcaatctctccccca 39468583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 40147335 - 40147423
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  40147335 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 40147423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 13239827 - 13239914
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  13239827 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaaatttggaccgaactgggt 13239914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 28750750 - 28750679
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||| ||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  28750750 ccatttgtatctttttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca 28750679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 37439217 - 37439304
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  37439217 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 37439304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 42426330 - 42426259
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| |||||||||||||||| || |||||||    
T  42426330 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctccccctgattaggtca 42426259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 213538 - 213628
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||| | |||||||   ||||||||| ||||||    
T  213538 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccatagtaggtcaagtttggaccgaactgggt 213628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 533842 - 533931
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||  ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  533842 ccatttgtatctctttgt-aagaactcattgatagtggattggaaagatcaatctctcccccatattaggtca-agttggaccgaactgggt 533931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 5058118 - 5058207
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||||||||||| | ||| |||||||  |||||||||| ||||||    
T  5058118 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcaatctctcctctagagtaggtca-agttggaccgaactgggt 5058207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 30683016 - 30682930
Alignment:
Q  9 tttgtatctctttgtaaaaa-actcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    ||||||| ||||||||| || |||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||    
T  30683016 tttgtatttctttgtaagaatactcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgg 30682930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 4160708 - 4160765
Alignment:
Q  43 gattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaa 100  Q
    |||| ||| ||||||||||||| ||||| ||||||| ||||||||| | |||||||||    
T  4160708 gattggagagatcaatctctcctccagagtaggtcattgttggaccaaactgggtaaa 4160765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 19806457 - 19806525
Alignment:
Q  28 aactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  19806457 aactccttgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 19806525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 25412836 - 25412904
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  25412836 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca 25412904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 27637704 - 27637618
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| || | ||| |||| ||| |||||||||||||  |||| ||||||| ||||||||||| ||||||    
T  27637704 tttgtatctctttgtaagaa-ctcatt-atagtggattggagagatcaatctctcctgcagagtaggtcattgttggaccgaactgggt 27637618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 31183039 - 31183133
Alignment:
Q  1 tgtaaccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||| |||||| || ||||| |||| | | |||| ||| |||| |||||||||||| | |||||||  |||||||||| ||||||    
T  31183039 tgtaaccatttgtatccctttgt-aagaactcattgatactggattggagagatctatctctcccccatattaggtca-agttggaccgaactgggt 31183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 33831753 - 33831824
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||||| |||| ||| ||||  || ||||||||||||||||| | |||||||    
T  33831753 ccatttgtatctctttgt-aagaactcattgatagtggattgaagagatcaatctctcccccatattaggtca 33831824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 33648247 - 33648339
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||| |||||||||| ||||| |||| ||  |||| ||| ||||||||||||| ||||| ||||||| ||||||||||| ||||||||||    
T  33648247 tttgtatttctttgtaaagaactcattgatagcggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgggtaaac 33648339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 24398133 - 24398219
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    |||||||||||||||||| ||||| |||| | | |||| ||| ||||||||||||||||| | ||||||| ||||||||||| ||||    
T  24398133 tttgtatctctttgtaaagaactcattgataatggattggagagatcaatctctcccccatagtaggtcattgttggaccgaactgg 24398219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 17057463 - 17057375
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  17057463 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagactaggtca-agttggaccgaactgggt 17057375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 17085446 - 17085358
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  17085446 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagactaggtca-agttggaccgaactgggt 17085358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 723839 - 723750
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  723839 ccatttgtatccctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 723750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 29867942 - 29868031
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  29867942 ccatttgtatctctttgtaagaa-ctctttgatagtggattggagagatcaatctctcccccaaattaggtca-agttggaccgaactgggt 29868031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 36773636 - 36773724
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| || ||||  |||||||||| ||||||    
T  36773636 catttgtatctctttgtaagaa-ctctttgatagtggattggagagatcaatctctcccccagattatgtca-agttggaccgaactgggt 36773724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 28672006 - 28672087
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccga 90  Q
    |||||||||||||  ||| |||||  ||| ||| |||| ||| ||||||||||||| ||||| ||||||| |||||||||||    
T  28672006 tttgtatctctttacaaagaactcactgacagtggattggagagatcaatctctcctccagagtaggtcattgttggaccga 28672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 45727004 - 45727091
Alignment:
Q  8 atttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  45727004 atttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 45727091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 32289639 - 32289727
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||   || ||||| |||| |||| ||||||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  32289639 tttgtatctcttttgtaagaactcattgatagtaaattagagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 32289727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 33162545 - 33162474
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||| ||||| || ||| |||| ||| |||||||| ||||||||||||||| ||| |||||||    
T  33162545 ccatttgtatctctctgtaagaa-ctcattgatagtggattagagagatcaatctctcccctagattaggtca 33162474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 36988168 - 36988081
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  36988168 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 36988081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 2334510 - 2334424
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctggg 96  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| |||||    
T  2334510 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactggg 2334424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 35446979 - 35446890
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||| ||||||| ||||| |||||||  |||||||||| ||||||    
T  35446979 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcactctctcctccagagtaggtca-agttggaccgaactgggt 35446890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 36318104 - 36318015
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||||||||||||  ||| |||||||  |||||||||| ||||||    
T  36318104 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcaatctctcccttagagtaggtca-agttggaccgaactgggt 36318015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 38312313 - 38312402
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| |  ||| |||| ||| |||| ||| ||||||||||||||||||| || ||||  |||||||||| ||||||    
T  38312313 ccatttgtatctctttgtaagat-ctcattgatagtggattggagagatcaatctctcccccagattatgtca-agttggaccgaactgggt 38312402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 6595098 - 6595030
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||| |||||||||||| || |||||||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  6595098 tttgaatctctttgtaagaa-ctcgttgatagtggattggagagatcaatctctcctccagagtaggtca 6595030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 34139844 - 34139776
Alignment:
Q  28 aactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  34139844 aactcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 34139776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 39284930 - 39284998
Alignment:
Q  28 aactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  39284930 aactcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 39284998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 1631827 - 1631756
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||||| |||| ||| |||| |||  |||||||||||| ||||| |||||||    
T  1631827 ccatttgtatctctttgt-aagaactcattgatagtggattggagaaatcaatctctcctccagagtaggtca 1631756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 17490240 - 17490150
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    |||||| |||||||||| || ||| |||| ||| ||||  || ||||||||||||||| ||| ||||||| | ||||||||| ||||||||||    
T  17490240 tttgtaactctttgtaagaa-ctcattgatagtggattgtagagatcaatctctcccctagagtaggtcaat-ttggaccgaactgggtaaac 17490150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 42362425 - 42362496
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||| |||||||| || ||| |||| ||| |||| ||| |||| |||||||||||||| |||||||    
T  42362425 ccatttgtatccctttgtaagaa-ctcattgatagtggattggagagatctatctctcccccagattaggtca 42362496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 27537 - 27454
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccga 90  Q
    |||||||||||||||||||| ||||  |||| ||| |||| ||| ||||||||||||||||| | ||||||| |||||||||||    
T  27537 catttgtatctctttgtaaataacttattgatagtggattggagagatcaatctctcccccatagtaggtcattgttggaccga 27454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 40221818 - 40221907
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || |||||||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  40221818 ccatttgtatctctttgtaagaa-ctcgttgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 40221907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 33352223 - 33352312
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  33352223 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 33352312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 40321153 - 40321242
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||| ||||||||||||||||| ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  40321153 ccattagtatctctttgtaaaaa-ctctttgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 40321242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 5689344 - 5689433
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| | |||||  |||||||||| ||||||    
T  5689344 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagatttggtca-agttggaccgaactgggt 5689433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 7597690 - 7597781
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaa 100  Q
    |||||||||||||||||| ||  | |||| ||| |||| ||| ||||||||||||||||| | ||||||| |||| |||||| |||| ||||    
T  7597690 tttgtatctctttgtaaagaatgcattgatagtggattggagagatcaatctctcccccatagtaggtcattgttagaccgaactggataaa 7597781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 15212859 - 15212948
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| | | |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  15212859 ccatttgtatctctttgtaagaa-ctcattgataatggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 15212948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 18655473 - 18655562
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||||||| ||||||||||||| ||| | |||||||  |||||||||| ||||||    
T  18655473 ccatttgtatctctttgtaagaa-ctcattgatagtggattagagagatcaatctctcctccaaagtaggtca-agttggaccgaactgggt 18655562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 3303764 - 3303672
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||||||||| || ||| |||| ||| ||||  || ||||||||||||||||| | |||||||  |||||||||| ||||||||||    
T  3303764 catttgtatctctttgtaagaa-ctcattgatagtggattgaagagatcaatctctcccccacagtaggtca-agttggaccgaactgggtaaac 3303672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 43036497 - 43036585
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  43036497 catttgtatctctttgtaagaa-ctcattgatagtggatttgagagatcaatctctcctccagattaggtca-agttggaccgaactgggt 43036585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 19491794 - 19491723
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || |||||||||| ||| ||||| || ||||||| ||||||||| | |||||||    
T  19491794 ccatttgtatctctttgt-aagaactcgttgatagtggattaaagagatcaatatctcccccatagtaggtca 19491723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 30143413 - 30143476
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccaga 70  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| |||||||||||||||||||    
T  30143413 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccaga 30143476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 10930294 - 10930205
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||| ||||||||||||| || | | |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  10930294 ccatttatatctctttgtaagaa-cacattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 10930205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 27811351 - 27811440
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || | | |||| ||| ||||  || ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  27811351 ccatttgtatctctttgtaagaacc-cattgatagtggattgaagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 27811440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 42435086 - 42434997
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||| || ||||| |||| ||| |||| |||  |||||||||||| ||||| |||||||  |||||||||| ||||||    
T  42435086 ccatttgtatctctttgt-aagaactcattgatagtggattggagaaatcaatctctcctccagagtaggtca-agttggaccgaactgggt 42434997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 6599066 - 6599134
Alignment:
Q  28 aactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||| |||| ||| |||||||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  6599066 aactcattgatagtggattagagagatcaatctctcccccatattaggtca-agttggaccgaactgggt 6599134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 6674519 - 6674587
Alignment:
Q  28 aactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||| |||| ||| |||||||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  6674519 aactcattgatagtggattagagagatcaatctctcccccatattaggtca-agttggaccgaactgggt 6674587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 4731731 - 4731794
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccaga 70  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| |||| ||||||||||||||    
T  4731731 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcgatctctcccccaga 4731794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 11712089 - 11712017
Alignment:
Q  13 tatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttgg 85  Q
    |||||||||||||| ||||| |||| ||| ||||  || |||||||||||||| || | ||||||| ||||||    
T  11712089 tatctctttgtaaataactcattgatagtggattgaagagatcaatctctccctcaaagtaggtcattgttgg 11712017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 18141893 - 18141964
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||||| ||| |||||||    
T  18141893 ccatttgtatcactttgtaagaa-ctctttgatagtggattggagagatcaatctctcccctagattaggtca 18141964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 31218333 - 31218420
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||| || || ||| |||| ||| |||||||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  31218333 tttgtatctctttggaagaa-ctcattgatagtggattagagagttcaatctctcctccagagtaggtcaagtttggaccgaactgggt 31218420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 34256599 - 34256512
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| | ||| |||||||   ||||||||| ||||||    
T  34256599 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctctagagtaggtcaagtttggaccgaactgggt 34256512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 42498270 - 42498357
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||| ||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  42498270 tttgtatttctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 42498357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 47255435 - 47255345
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  47255435 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgggt 47255345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 28220321 - 28220232
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  28220321 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 28220232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 28265649 - 28265560
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  28265649 ccatttgtatctctttgtaagaa-ctctttgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 28265560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 47115248 - 47115335
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| | | |||| ||| |||| ||| ||||||||||| | ||||| ||||||| ||||||||||| ||||||    
T  47115248 tttgtatctctttgtaaaaacc-cattgatagtggattggagagatcaatctctgctccagagtaggtcattgttggaccgaactgggt 47115335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 50167270 - 50167207
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccaga 70  Q
    ||||||||||||||||||||||| ||| |||| ||| |||| ||| |||||||||||||||||||    
T  50167270 ccatttgtatctctttgtaaaaa-ctcattgatagtggattggagagatcaatctctcccccaga 50167207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 3156938 - 3157027
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  3156938 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccatattaggtca-agttggaccgaactgggt 3157027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 13547184 - 13547095
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  13547184 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 13547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 13549095 - 13549006
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  13549095 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 13549006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 28223516 - 28223427
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  28223516 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccatattaggtca-agttggaccgaactgggt 28223427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 42298069 - 42297980
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| ||||  || ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  42298069 catttgtatctctttgtaagaa-ctcattgatagtggattgaagagatcaatctctcctccagagtaggtcatggttggaccgaactgggt 42297980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 45644448 - 45644360
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||| ||||||||||| |||||||  |||||||||| ||||||    
T  45644448 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatatctcccccagattaggtca-agttggaccgaactgggt 45644360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 37168374 - 37168460
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  37168374 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 37168460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 41360987 - 41361058
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || |||||||||| ||| ||||| || ||||||| ||||||||| | |||||||    
T  41360987 ccatttgtatctctttgt-aagaactcgttgatagtggattaaagagatcaatatctcccccatagtaggtca 41361058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 49918423 - 49918494
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||    
T  49918423 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccaaattaggtca 49918494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 834262 - 834173
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||| |||||||| || ||| |||| ||| |||| ||| |||| |||||||||||||| |||||||  |||||||||| ||||||    
T  834262 ccatttgtatccctttgtaagaa-ctcattgatagtggattggagagatctatctctcccccagagtaggtca-agttggaccgaactgggt 834173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 1833596 - 1833666
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  1833596 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctccaccagattaggtca 1833666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 13659431 - 13659342
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||| ||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| ||||| |  |||||||||| ||||||    
T  13659431 ccatttatatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagagtaggtta-agttggaccgaactgggt 13659342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 28242382 - 28242467
Alignment:
Q  10 ttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||| || ||| || | ||| |||| ||| ||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  28242382 ttgtatctctttgtaagaa-ctcatt-atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgggt 28242467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 31659311 - 31659400
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||  |||| ||| |||| ||| |||||||||||||| |||| |||||||  |||||||||| ||||||    
T  31659311 ccatttgtatctctttgtaagaa-cttattgatagtggattggagagatcaatctctccctcagattaggtca-agttggaccgaactgggt 31659400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 44455234 - 44455304
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||| ||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  44455234 catttgtatctttttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca 44455304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 8550881 - 8550792
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  8550881 catttgtatccctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 8550792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 19754570 - 19754639
Alignment:
Q  8 atttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||| |||| ||| |||| ||| |||||||||||||| |||| |||||||    
T  19754570 atttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctccctcagattaggtca 19754639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 46064996 - 46065084
Alignment:
Q  11 tgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||||| || ||| || | ||| |||| ||| ||||||||||||||||||| |||||||  |||||| ||| ||||||||||    
T  46064996 tgtatctctttgtaagaa-ctcattcatagtggattggagagatcaatctctcccccagagtaggtca-agttggatcgaactgggtaaac 46065084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 6808528 - 6808609
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccga 90  Q
    |||||||||||||||||| ||||| || | ||| |||| ||| ||||||||||| || |||| ||||| | |||||| ||||    
T  6808528 tttgtatctctttgtaaagaactcatttatagtggattggagagatcaatctcttcctcagagtaggttattgttggtccga 6808609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22079383 - 22079484
Alignment:
Q  1 tgtaaccattt-gtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaa 99  Q
    ||||||||||| ||||||||||||||| ||||| |||| | | |||| ||| ||||||| ||||| ||| | ||||||| || |||||| | || |||||    
T  22079383 tgtaaccattttgtatctctttgtaaagaactcattgatattggattggagagatcaatttctcctccaaagtaggtcattgctggaccaaacttggtaa 22079482  T
Q  100 ac 101  Q
    ||    
T  22079483 ac 22079484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 37559963 - 37559903
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctccccc 67  Q
    |||||||||||||||||||| || |||||||| |||  ||| ||| ||||||||||||||||    
T  37559963 ccatttgtatctctttgtaagaa-ctcgttgatagtgaattggagagatcaatctctccccc 37559903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 11348771 - 11348842
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||| ||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  11348771 ccatttgtatctctttctaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca 11348842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 13938213 - 13938302
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccaga-ataggtcactgttggaccgacctgggtaa 99  Q
    ||||||||||||||||| |||||| |||| ||| |||| ||| ||||  |||||||||||||  ||||||| |||||| | || ||||||||    
T  13938213 tttgtatctctttgtaagaaactcattgatagtggattggagagatc--tctctcccccagatgtaggtcattgttgggctgaactgggtaa 13938302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 31925802 - 31925731
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||||||||||| | ||| |||||||    
T  31925802 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcaatctctcctctagagtaggtca 31925731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 37503648 - 37503589
Alignment:
Q  10 ttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccaga 70  Q
    |||||||||||||||| || ||| |||| ||| |||| ||| |||||||||||||||||||    
T  37503648 ttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccaga 37503589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 5043701 - 5043790
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||| ||| | ||||||| ||||||||||| ||||||    
T  5043701 catttgtatctctttgtaagaa-ctcattgatagtagattggagagatcaatctctcctccatagtaggtcattgttggaccgaactgggt 5043790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 603183 - 603094
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || |||||||| ||| |||| |||  |||||||||||||| ||| |||||||  |||||||||| ||||||    
T  603183 ccatttgtatctctttgtaagaa-ctcgttgatagtggattggagaaatcaatctctccccaagattaggtca-agttggaccgaactgggt 603094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 21589004 - 21589093
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  21589004 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 21589093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 21593737 - 21593826
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  21593737 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 21593826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 2171632 - 2171537
Alignment:
Q  1 tgtaaccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||| ||||||||||||||||| || ||| |||| ||| |||| ||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  2171632 tgtaaccctttgtatctctttgtaagaa-ctcattgatagtggattggagagttcaatctctcctccagagtaggtcaagtttggaccgaactgggt 2171537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 28137503 - 28137432
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||| ||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  28137503 ccatttgtatttctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagagtaggtca 28137432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 9183126 - 9183037
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||||||||||| ||||| || ||||  |||||||||| ||||||    
T  9183126 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcaatctctcctccagattatgtca-agttggaccgaactgggt 9183037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 5409161 - 5409076
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||    
T  5409161 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgg 5409076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 5413486 - 5413401
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||    
T  5413486 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgg 5413401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 26800664 - 26800748
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    ||||||||||||||||| || ||| || | ||| |||| ||| ||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  26800664 tttgtatctctttgtaagaa-ctcatt-atagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgg 26800748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 33211279 - 33211191
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| || | | | |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  33211279 catttgtatctctttgtaagaa-ctcatttataatggattggagagatcaatctctcccccagagtaggtca-agttggaccgaactgggt 33211191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 3808800 - 3808732
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  3808800 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca 3808732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 5406292 - 5406224
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  5406292 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca 5406224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 5410617 - 5410549
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  5410617 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca 5410549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 412177 - 412265
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||   || ||||| |||| ||| |||||||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  412177 tttgtatctcttttgtaagaactcattgatagtggattagagagttcaatctctcctccagagtaggtcaagtttggaccgaactgggt 412265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 2973034 - 2972963
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||||||||||| | ||| |||||||    
T  2973034 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcaatctctcctcaagagtaggtca 2972963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 3038998 - 3038927
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| || | ||| |||| ||| ||| ||||||||||||||| |||||||    
T  3038998 ccatttgtatctctttgtaagaa-ctctttaatagtggattggagagattaatctctcccccagattaggtca 3038927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 26830218 - 26830147
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||||||||||| ||| | |||||||    
T  26830218 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcaatctctcctccaaagtaggtca 26830147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 31404767 - 31404680
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||| ||   ||||||||| ||||||    
T  31404767 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggccaagtttggaccgaactgggt 31404680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 8359408 - 8359321
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  8359408 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcattgttggaccgaactgggt 8359321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 18126717 - 18126806
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| |||| |||||||||||||||||| |||||||  ||| |||||||||||||    
T  18126717 ccatttgtatctctttgtaagaa-ctcattgatagtggattggaggaatcaatctctcccccagactaggtca-agtttgaccgacctgggt 18126806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 3904709 - 3904624
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    |||| ||||||||||||| ||||| |||| ||| ||| |||| |||||||||||||| |||| ||||||| ||||||||||| ||||    
T  3904709 tttgcatctctttgtaaagaactcattgatagt-gatcagagagatcaatctctccctcagagtaggtcattgttggaccgaactgg 3904624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 1113730 - 1113801
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| |||||||| ||| ||||||||||||||||| | |||||||    
T  1113730 ccatttgtatctctttgtaagaa-ctcattgatagtagattggagagatcaatctctcccccatattaggtca 1113801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 48491652 - 48491723
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||| ||| ||||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  48491652 ccatttgtatctctttg-aaagaactcattgatagtggattggagagatcaatctctcccccagattaggtca 48491723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 6432044 - 6432133
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || |||||||| ||| |||| ||| |||||||||||||  |||| |||||||  |||||||||| ||||||    
T  6432044 ccatttgtatctctttgtaagaa-ctcgttgatagtggattggagagatcaatctctccttcagagtaggtca-agttggaccgaactgggt 6432133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 8153416 - 8153486
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  8153416 catttgtatctctttgtaataa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca 8153486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 14069928 - 14069839
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||| ||| |||||||  |||||||||| ||||||    
T  14069928 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctccccaagattaggtca-agttggaccgaactgggt 14069839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 14379956 - 14379867
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||| ||| |||||||  |||||||||| ||||||    
T  14379956 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccctagattaggtca-agttggaccgaactgggt 14379867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 22328483 - 22328392
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaa 100  Q
    |||||||||||||| ||  || || || | ||| |||| ||| ||||||||||||||| ||| ||||||| ||||||||||| |||||||||    
T  22328483 tttgtatctctttgcaaggaagtcattaatagtggatttgagagatcaatctctcccctagagtaggtcattgttggaccgaactgggtaaa 22328392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 27347890 - 27347979
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| ||||  || ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  27347890 ccatttgtatctctttgtaagaa-ctcattgatagtggattgcagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 27347979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 32358149 - 32358060
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  32358149 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 32358060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 41317529 - 41317440
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  41317529 ccatttgtatccctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 41317440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 43864317 - 43864406
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||| |||||||  |||| ||| |||| ||| |||||||||||| |||||| |||||||  |||||||||| ||||||    
T  43864317 ccatttgtatctctttgt-aaaaactaattgatagtggattggagagatcaatctctctcccagattaggtca-agttggaccgaactgggt 43864406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 48489504 - 48489597
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||||||| || || ||| || | ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||||||    
T  48489504 ccatttgtatctctttgcaataa-ctcattcatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggtaaac 48489597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 30024827 - 30024740
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| |||||||| |||||||||| |||||||  |||||||||| ||||    
T  30024827 ccatttgtatctctttgt-aagaactctttgatagtggattggagagatcaatcactcccccagagtaggtca-agttggaccgaactgg 30024740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 4253617 - 4253530
Alignment:
Q  13 tatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    |||||||||| ||| ||||| |||| | | |||||||| |||||||||||||| |||| ||||||| | ||||||||| || |||||||    
T  4253617 tatctctttggaaagaactcattgataatggattagagagatcaatctctcccacagagtaggtcaat-ttggaccgaactaggtaaac 4253530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 18396393 - 18396485
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||| |||| || || |||| ||  |||| ||| ||||||||||||| | ||| ||||||| || |||||||| ||||||||||    
T  18396393 tttgtatctctttataaagaattcattgatagaggattggagagatcaatctctcctcaagagtaggtcaatggtggaccgaactgggtaaac 18396485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 26417389 - 26417448
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccc 66  Q
    |||||||||||||||||||| || |||||||| ||| |||| ||| |||||||||||||||    
T  26417389 ccatttgtatctctttgtaagaa-ctcgttgatagtggattggagagatcaatctctcccc 26417448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 36146503 - 36146432
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||    
T  36146503 ccatttgtatctctttgtaagaa-ctcattgatagtggatttgagagatcaatctctcccccatattaggtca 36146432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 2361066 - 2360996
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||||| || ||| |||| ||| |||| |||  |||||||||||||||||| |||||||    
T  2361066 catttgtatctctttgtaagaa-ctcattgatagtggatttgagatatcaatctctcccccagattaggtca 2360996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 3259069 - 3259139
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||| |||||| | |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  3259069 catttgtatctctttgt-aaaaacccattgatagtggattggagagatcaatctctcctccagagtaggtca 3259139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 22270046 - 22270135
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||  |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  22270046 ccatttgtatctctttgtaagaa-ctgattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 22270135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 24525596 - 24525526
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||| ||| |||||||    
T  24525596 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctccccaagattaggtca 24525526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 31518976 - 31519069
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctc-ccccagaataggtcactgttggaccgacctgggtaaac 101  Q
    ||||||||||||||||| || ||||| |||| ||| |||| ||| |||||||||||| ||||||| |||||||  |||||||||| |||| |||||    
T  31518976 catttgtatctctttgt-aagaactcattgacagtggattggagagatcaatctctctccccagagtaggtca-agttggaccgaactggataaac 31519069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 31733064 - 31732975
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| | | |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  31733064 ccatttgtatctctttgtaagaa-ctcattgatactggattggagagatcaatctctcccccaaattaggtca-agttggaccgaactgggt 31732975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 41649106 - 41649017
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  41649106 ccatttgtatccctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccaaattaggtca-agttggaccgaactgggt 41649017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 25615926 - 25616015
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctggg 96  Q
    |||||||||||  ||||||| || ||| |||| ||| |||||||| ||||||||||||| ||||| |||||||   ||||||||| |||||    
T  25615926 ccatttgtatcattttgtaagaa-ctcattgatagtggattagagagatcaatctctcctccagagtaggtcaagtttggaccgaactggg 25616015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 34310810 - 34310721
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||| ||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  34310810 catttgtatctttttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 34310721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 4508801 - 4508746
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctct 62  Q
    |||||||||||||||||| || ||||| |||||||| |||| ||| |||||||||||    
T  4508801 ccatttgtatctctttgt-aagaactcattgagagtggattggagagatcaatctct 4508746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 5116675 - 5116739
Alignment:
Q  4 aaccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctccccca 68  Q
    |||| |||||||||||||||||| ||||| |||| |||  ||| ||| ||| |||||||||||||    
T  5116675 aaccttttgtatctctttgtaaagaactcattgatagtgaattggagagataaatctctccccca 5116739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 6360047 - 6359976
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||||||||| ||||| | |||||||    
T  6360047 ccatttgtatctctttgt-aagaactcattgatagttgattggagagatcaatctcttccccatattaggtca 6359976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 23555116 - 23555203
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||| |||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  23555116 tttgtacctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 23555203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 29991129 - 29991216
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||| ||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  29991129 tttgtatctctttctaataa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 29991216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 35853990 - 35854077
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  35853990 tttgtatctctttgtaagaa-ctcattgatagtggattggagagttcaatctctcctccagagtaggtcaagtttggaccgaactgggt 35854077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 47674038 - 47673979
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccc 66  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| |||||||||||||||    
T  47674038 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcaatctctcccc 47673979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10556 - 10655
Alignment:
Q  1 tgtaaccattt-gtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggtaa 99  Q
    ||||||||||| |||||||||||||| || |||||||| ||| ||||  || ||||||||||||| ||||| |||||||  |||||||||| ||||||||    
T  10556 tgtaaccattttgtatctctttgtaagaa-ctcgttgatagtggattgaagagatcaatctctcctccagagtaggtca-agttggaccgaactgggtaa 10653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 40735450 - 40735545
Alignment:
Q  1 tgtaacca-tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||| ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  40735450 tgtaaccagtttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 40735545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 29810941 - 29811012
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  29810941 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca 29811012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 32891178 - 32891264
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgg 95  Q
    ||||||||||||||||||| || |||||||| ||| |||| ||| ||| |||||||||||| || ||||||| ||||||||||| ||||    
T  32891178 catttgtatctctttgtaagaa-ctcgttgatagtggattggagagataaatctctcccccggagtaggtca-tgttggaccgaactgg 32891264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 46860547 - 46860630
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccga 90  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||| ||| ||||| ||||||| |||||||||||    
T  46860547 ccatttgtatctctttgtaataa-ctcattgatagtggattggagagatcaatctttcctccagagtaggtcattgttggaccga 46860630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 29196481 - 29196392
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  29196481 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccaaattaggtca-agttggaccgaactgggt 29196392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 44331618 - 44331707
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||  |||| ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  44331618 ccatttgtatctctttgtaagaa-cttattgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 44331707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 30236200 - 30236269
Alignment:
Q  8 atttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  30236200 atttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca 30236269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 34491286 - 34491374
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||  |||||||||| ||||||    
T  34491286 catttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca-agttggaccgaactgggt 34491374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 40913367 - 40913455
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| | || ||| |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  40913367 catttgtatctctttgtaagaa-ctcatcgatagtggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 40913455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 760920 - 760991
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    ||||||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  760920 ccatttgtatccctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagattaggtca 760991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 6095694 - 6095623
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||    
T  6095694 ccatttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtca 6095623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 7762341 - 7762428
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  7762341 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 7762428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 46173430 - 46173501
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||| ||  || |||| ||| |||| ||| ||||||||||||||||||| |||||||    
T  46173430 ccatttgtatctctttgtaagaat-tcattgatagtggattggagagatcaatctctcccccagattaggtca 46173501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 49199561 - 49199474
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||| || ||||| |||| ||| |||| ||| ||| ||||||||| ||||| |||||||  |||||||||| ||||||    
T  49199561 tttgtatctctttgt-aagaactcattgatagtggattggagagattaatctctcctccagactaggtcatggttggaccgaactgggt 49199474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 9581355 - 9581445
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||||| |||||||   ||||||||| ||||||    
T  9581355 ccatttgtatccctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccagagtaggtcaagtttggaccgaactgggt 9581445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 16499102 - 16499191
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||| ||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| ||||| |  |||||||||| ||||||    
T  16499102 ccatttatatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagagtaggtta-agttggaccgaactgggt 16499191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 29813136 - 29813225
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||| |||||||||||| || ||| || | ||| |||| ||| ||||||||||||||||||| | ||||| ||||||||||| ||||||    
T  29813136 ccatttgcatctctttgtaagaa-ctcatttatagtggattggagagatcaatctctcccccagatttggtca-tgttggaccgaactgggt 29813225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33191899 - 33191960
Alignment:
Q  1 tgtaaccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctc 63  Q
    ||||||||||| ||| |||||||||| ||||| |||| ||| |||||||| ||||||||||||    
T  33191899 tgtaaccattt-tatgtctttgtaaagaactcattgatagtggattagagagatcaatctctc 33191960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 40734572 - 40734660
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||| |||||||| || ||| |||| ||| |||| ||| ||||||||||||||||| | |||||||  |||||||||| ||||||    
T  40734572 catttgtatccctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccaaattaggtca-agttggaccgaactgggt 40734660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51352211 - 51352150
Alignment:
Q  1 tgtaaccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctc 63  Q
    ||||||||||||||| ||||||| || ||||| |||||||| |||| ||| ||||||||||||    
T  51352211 tgtaaccatttgtatttctttgt-aataactcattgagagtggatttgagagatcaatctctc 51352150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 55302065 - 55301984
Alignment:
Q  8 atttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccga 90  Q
    |||||||||||||||||| ||  || |||| ||| |||| ||| ||||||||||||| ||| | ||||||| |||||||||||    
T  55302065 atttgtatctctttgtaagaat-tcattgatagtggattggagagatcaatctctcctccatagtaggtcattgttggaccga 55301984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 4055856 - 4055767
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccaga-ataggtcactgttggaccgacctgggtaa 99  Q
    ||||||||||||||||| |||||| |||| ||| ||||  || ||||  |||||||||||||  ||||||| |||||| |||| ||||||||    
T  4055856 tttgtatctctttgtaagaaactcattgatagtggattgaagagatc--tctctcccccagatgtaggtcattgttgggccgaactgggtaa 4055767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 19683981 - 19683894
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| ||| | |||||||   ||||||||| ||||||    
T  19683981 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctccatagtaggtcaagtttggaccgaactgggt 19683894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 45095239 - 45095326
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||| | ||| |||||||   ||||||||| ||||||    
T  45095239 tttgtatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcctctagagtaggtcaagtttggaccgaactgggt 45095326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 54593777 - 54593840
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccaga 70  Q
    |||||||||||||||||| || ||||| |||| ||| |||| ||| ||||||||||||| |||||    
T  54593777 ccatttgtatctctttgt-aagaactcattgatagtggattggagagatcaatctctcctccaga 54593840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 20510 - 20421
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||||||||| || ||| |||| | | |||| ||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  20510 ccatttgtatctctttgtaagaa-ctctttgatattggattggagagatcaatctctcccccagattaggtca-agttggaccgaactgggt 20421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 149192 - 149103
Alignment:
Q  6 ccatttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||| ||||||||||||| || ||| |||| ||| |||| ||| ||||||||||||||||||| ||||| |  |||||||||| ||||||    
T  149192 ccatttatatctctttgtaagaa-ctcattgatagtggattggagagatcaatctctcccccagagtaggtta-agttggaccgaactgggt 149103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 11631 - 11720
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||||| || ||| |||| ||| |||| ||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  11631 catttgtatctctttgtaagaa-ctcattgatagtggattggagagttcaatctctcctccagagtaggtcaagtttggaccgaactgggt 11720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 8828 - 8740
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||   || |||||||||| ||| |||| ||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  8828 tttgtatctcttttgtaagaactcgttgatagtggattggagagttcaatctctcctccagagtaggtcaagtttggaccgaactgggt 8740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 11254 - 11166
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    |||||||||||||   || |||||||||| ||| |||| ||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  11254 tttgtatctcttttgtaagaactcgttgatagtggattggagagttcaatctctcctccagagtaggtcaagtttggaccgaactgggt 11166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 18097 - 18028
Alignment:
Q  7 catttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtca 78  Q
    |||||||||||||||||||||  ||| |||| ||| |||| ||| ||||||||||||| ||||  |||||||    
T  18097 catttgtatctctttgtaaaa--ctcattgatagtggattggagagatcaatctctcctccagggtaggtca 18028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 434609 - 434696
Alignment:
Q  9 tttgtatctctttgtaaaaaactcgttgagagtagattagagggatcaatctctcccccagaataggtcactgttggaccgacctgggt 97  Q
    ||||||||||||||||| || ||| |||| ||| |||| ||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  434609 tttgtatctctttgtaagaa-ctcattgatagtggattggagagttcaatctctcctccagagtaggtcaagtttggaccgaactgggt 434696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University