View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_59 (Length: 225)
Name: NF16798_low_59
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 1865441 - 1865232
Alignment:
| Q |
1 |
gaatatccaggttttgatatgtttgcccca--actgattccttgttgtagactcatgtatgtattttgagtattataagtcgacacatttgatatatctc |
98 |
Q |
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| T |
1865441 |
gaatatccaggttttgatatgtttgcccccccactgattccttgttgtagactcatgtttgtattttgagtattataagtcgacacatttgaaatatctc |
1865342 |
T |
|
| Q |
99 |
catgaaaagacatatcaataataccggatgatgatccaccatttttattattagataaacttgaatctacaccttgtagaatattttttagattcaagcc |
198 |
Q |
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| T |
1865341 |
catgaaaagacatatcaataataccggatgatgatccaccatttttagtattagataaacttgaatctacaccatgtagaatattttttagattcaagcc |
1865242 |
T |
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| Q |
199 |
ttttgaagtt |
208 |
Q |
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|||||||||| |
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| T |
1865241 |
ttttgaagtt |
1865232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 1865693 - 1865511
Alignment:
| Q |
1 |
gaatatccaggttttgatatgtttgcccc--aactgattccttgttgtagactcatgtatgtattttgagtattataagtcgacacatttgatatatctc |
98 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||| ||||||| |
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| T |
1865693 |
gaatatctaggttttgatatgtttgccccccaactgattccttgttgtagactcatgtttgtattttgagtattataa---ggcacacttgaaatatctc |
1865597 |
T |
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| Q |
99 |
catgaaaagacatatcaataataccggatgatgatccaccattttta---ttattagataaacttgaatctacaccttgtagaata |
181 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||| ||||| ||||||||| |
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| T |
1865596 |
catgaaaagacatatcaataataccagatgatgacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaata |
1865511 |
T |
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