View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_62 (Length: 202)
Name: NF16798_low_62
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 37331528 - 37331699
Alignment:
| Q |
15 |
atgaagtcgcagtactatctaataaggtagagtatatggcttaccatatcatgcgtaaggttaaattgttcaacattaagattataattaaataattgaa |
114 |
Q |
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| T |
37331528 |
atgaagtcgcagtactatctaataaggtagagtgtatggcttaccatatcatgcgtaaggttaaattgttcaacattaagattataattaaataattgaa |
37331627 |
T |
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| Q |
115 |
cttaaataatgtgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgcagggttcctta |
186 |
Q |
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| T |
37331628 |
cttaaataatgtgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgcagggttcctta |
37331699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 37343794 - 37343901
Alignment:
| Q |
76 |
taaattgttcaacattaagattataattaaataattgaacttaaataatgtgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgc |
175 |
Q |
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| T |
37343794 |
taaattgttcaacattaggattaaaattaattaattgaatttaaatt---tgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgt |
37343890 |
T |
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| Q |
176 |
agggttcctta |
186 |
Q |
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| T |
37343891 |
cgggttcctta |
37343901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 37322676 - 37322740
Alignment:
| Q |
122 |
aatgtgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgcagggttcctta |
186 |
Q |
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| T |
37322676 |
aatgtgtatttttcagcacactagctcaatggatcacaggaagaaaggacatgttgggttcctta |
37322740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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