View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16798_low_8 (Length: 636)
Name: NF16798_low_8
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 15 - 618
Target Start/End: Original strand, 48068571 - 48069172
Alignment:
| Q |
15 |
cataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48068571 |
cataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatg |
48068670 |
T |
|
| Q |
115 |
tatttccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48068671 |
tatttccatcatttgatgttcgttccttgattgttccatgctcaaacaccgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacc |
48068770 |
T |
|
| Q |
215 |
tccatattgtgctctctgaggttctgggacacactgctttatttcaagacaagtttgtgacttaaaacacgttgatgtgaaatcatccaattggattaat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48068771 |
tccatattgtgctctctgaggttctgggacacactggtttatttcaagacaagtttgtgacttaaaacacattgatgtgaaatcatccaattggattaat |
48068870 |
T |
|
| Q |
315 |
aatatactagttttatgtcacgtcaatnnnnnnncttgctacttcgcaatttttgattcaaaactaggagtgcgggacaaaaatggattttatgaaggaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48068871 |
aatatactagttttatgtcacgtcaataaaaaaagttgctaattcgcaatttttgattcaaaactatgagtgcgggacaaaaatggattttatgaaggag |
48068970 |
T |
|
| Q |
415 |
aaaattgtgagtgagtaaaaatatgagaccaaaactacaattgagtctcatcgtaannnnnnngacgagacacttttagtaaatgaaaggactaaaaaga |
514 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
48068971 |
aaaattgtgagtgagtaaaaatat--gaccaaaactacaattgagtctcatcgtaatttttttgacgagacacttttagtaaataaaatgactaaaaaga |
48069068 |
T |
|
| Q |
515 |
atagaaaaatgataaaagacacgacaaatattttcgtgctacacacacgaatgtggtaacaacctccatatacaagggtttctctcgatttctacgttgg |
614 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
48069069 |
atagaaaaatgctaaaagacacgataaatattttcgtgctacacacacgaatgtggtaacaacctccatatacaagggtttctctctatttctatattgg |
48069168 |
T |
|
| Q |
615 |
gttt |
618 |
Q |
| |
|
|||| |
|
|
| T |
48069169 |
gttt |
48069172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 48063920 - 48064162
Alignment:
| Q |
20 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
119 |
Q |
| |
|
|||||||||||| || ||||||||| |||||| ||||||||| || ||||| |||| ||| |||| |||| |||||||||| ||||||| ||| ||||| |
|
|
| T |
48063920 |
gttaccagaaaacatgtatatcattcctttcttcagttggaccttctgtgagaaaccatccaatgtttgtcttctgttgctagcaacaatgaatctattt |
48064019 |
T |
|
| Q |
120 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
219 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48064020 |
tcatcatttgatattcgttcctcgattgttccatttccaaacactctccaaccctttatgttgtgatcaaatcctggatttactataatgcctcctccat |
48064119 |
T |
|
| Q |
220 |
attgtgctctctgaggttctgggacacactgctttatttcaag |
262 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
48064120 |
attgtgccctcttaggttctgtcacacactgctttatttcaag |
48064162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 48101168 - 48101407
Alignment:
| Q |
15 |
cataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatg |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||| || ||||| |||||||| ||||||||||||||||||||| ||||||| ||| |
|
|
| T |
48101168 |
cataggttaccagaaaaagtatatatcattcctttcttcagttggaccttctgtgaaaaactatccaatggttgtgttctgttgctggcaacaatgaatc |
48101267 |
T |
|
| Q |
115 |
tatttccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacc |
214 |
Q |
| |
|
||||||| | |||||| |||||||| ||||||||||| |||||||| |||| | || ||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
48101268 |
tatttccgttgtttgatactcgttcctcgattgttccatttccaaacactttccagccatttatgttgtgatcaaatcctggatttactgtaatgcctcc |
48101367 |
T |
|
| Q |
215 |
tccatattgtgctctctgaggttctgggacacactgcttt |
254 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
48101368 |
cccatattgtgccctcttaggttctgtcacacactgcttt |
48101407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 48107589 - 48107808
Alignment:
| Q |
20 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
119 |
Q |
| |
|
|||||| |||||| ||||||||| | ||||||| || || || ||||||| ||||||||||||| ||||||||| |||||| ||||||| ||| ||||| |
|
|
| T |
48107589 |
gttacctgaaaaagtatatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
48107688 |
T |
|
| Q |
120 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
219 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||| |||| ||||||||| ||| ||||||||||||||||| | |||||||||||| || ||||||| |
|
|
| T |
48107689 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttactataattccccctccat |
48107788 |
T |
|
| Q |
220 |
attgtgctctctgaggttct |
239 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
48107789 |
attgtgctctttgaggttct |
48107808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 517 - 572
Target Start/End: Original strand, 10396383 - 10396438
Alignment:
| Q |
517 |
agaaaaatgataaaagacacgacaaatattttcgtgctacacacacgaatgtggta |
572 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||| | |||||||||||||| |
|
|
| T |
10396383 |
agaaaaatggtaaatgacacaacaaatattttcgtgctaaagacacgaatgtggta |
10396438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University