View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_high_4 (Length: 426)
Name: NF16799_high_4
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 420
Target Start/End: Original strand, 31538687 - 31539106
Alignment:
| Q |
22 |
ttatttaccattaattaatctcaaacttgtttaaaaacaattgtacctgcaaaagctgaaccacctcaatagaaaggcctgcaacaagatctcttcgtga |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31538687 |
ttatttaccattaattaatctcaaacttgtttaaaaacaattgtacctgcaaaagctgaaccacctcaatagaaaggcctgcaacaagatctcttggtga |
31538786 |
T |
|
| Q |
122 |
aaccatagcctaaccatgatgtaaagaagacaggtcagtgtccacattcatatc--taaggatatatcaccattaaggttatcaaaatagcttatacata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31538787 |
aaccatagcctaaccatgatgtaaagaagacaggtcagtgtccacattcaaatcatgaaggaaatatcaccattaaggttatcaaaatagcttatacata |
31538886 |
T |
|
| Q |
220 |
agcactcatatctaaggatcgggtttgggtcacatgcatcccagtctaaccttagaatactcaggtctgaaaatc-------------------gagtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
31538887 |
agcactcatatctaaggatcgggtttgggtcacatacatcccagtctaaccttagaatactcaggtctgaaaaccgagtaatagatccaaaacagagtaa |
31538986 |
T |
|
| Q |
301 |
ttgcagaaaaatcaaacaacagctaagaatactacacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaaaagagtctaaacca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31538987 |
ttgcagaaaaatcaaacaacagctaagaatactacacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaaaagagtctaaacca |
31539086 |
T |
|
| Q |
401 |
tgacatcatgttcatctcac |
420 |
Q |
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| T |
31539087 |
tgacatcatgttcatatcac |
31539106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 44852453 - 44852563
Alignment:
| Q |
23 |
tatttaccattaattaatctcaaacttgtttaaaaacaattgtacctgcaaaagctgaaccacctcaatagaaaggcctgcaacaagatctcttcgtgaa |
122 |
Q |
| |
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||||||| ||||||||| | |||| |||||||||||||||| ||||||||||||| ||||| ||||||||| || ||||| ||||||||| || || | |
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| T |
44852453 |
tatttacaattaattaaacgcaaatttgtttaaaaacaattttacctgcaaaagcggaacctcctcaatagggagttctgcaccaagatctcctcttgca |
44852552 |
T |
|
| Q |
123 |
accatagccta |
133 |
Q |
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||||||||||| |
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| T |
44852553 |
accatagccta |
44852563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 33869997 - 33870061
Alignment:
| Q |
323 |
ctaagaatactacacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaaa |
387 |
Q |
| |
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|||| ||||||||||||||||||| | |||||||||||| | ||||||||| |||||||||||| |
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| T |
33869997 |
ctaaaaatactacacatgttaaatcgcaaaattcaaaacaagaaattgagtaaattaatcacaaa |
33870061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 46494883 - 46494940
Alignment:
| Q |
334 |
acacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaaaagag |
391 |
Q |
| |
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| T |
46494883 |
acacatgttaaattaaaaaattcacaacaacaaattgaattgattaatcataaaagag |
46494940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 8024971 - 8025034
Alignment:
| Q |
332 |
ctacacatgttaaa--ttgaaaaattcaaaaccataaattgagttgattaatcacaaaagagtc |
393 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
8024971 |
ctacacatgttaaaaattgaaaaattcaaaataataaattatgttgattaatcacaaaggagtc |
8025034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 8017700 - 8017755
Alignment:
| Q |
331 |
actacacatgttaaattgaaaaattcaaaaccataaattgagttgattaatcacaa |
386 |
Q |
| |
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|||||||||||||||||| |||||| ||||| | ||||| ||||| |||||||||| |
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| T |
8017700 |
actacacatgttaaattgcaaaatttaaaacaagaaatttagttgcttaatcacaa |
8017755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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