View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_high_6 (Length: 420)
Name: NF16799_high_6
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 39831252 - 39830854
Alignment:
| Q |
1 |
atctaaacgcacatggttacataccttactttcatgcttgcaaattttgtttttagtcatattttagtcattgccagagaattttctggtaagaaaaatt |
100 |
Q |
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| T |
39831252 |
atctaaacgcacatggttacataccttactttcatgcttgcaaattttgtttttagtcatattttagtcattgccagagaattttctggtaagaaaaatt |
39831153 |
T |
|
| Q |
101 |
ccaaacactgcttcaaaaaatttgctttatcccatatgtcttgtagttcttgtaacatgtctaggaatcctcctcaaaaatctcatgcacaaatattata |
200 |
Q |
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| T |
39831152 |
ccaaacactgcttcaaaaaatttgctttatcccatatgtcttgtagttcttgtaacatgtctaggaatcctcctcaaaaatctcatgcacaaatattata |
39831053 |
T |
|
| Q |
201 |
attaaggttccttaacttttgttgttctccttttgtgcatcccttagattcttctcattcttctcttcggctgagccatttcacacaaatttatgtctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39831052 |
attaaggttccttaacttttgttgttctccttttgtgcatcccttagattcttctcattcttctcttcggctgagccatttcacacaaatttatgtctta |
39830953 |
T |
|
| Q |
301 |
attattacttgttttgtgaaagataaatttaaataacctagatgggaaaaagttagtcacctttttaatttaattgtaagattccattctggtacgcct |
399 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39830952 |
attaataattgttttgtgaaagataaatttaaataacctagatgggaaaaagttagtcacctttttaatttaattgtaagattccattctggtacgcct |
39830854 |
T |
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