View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_1 (Length: 874)
Name: NF16799_low_1
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 183 - 457
Target Start/End: Complemental strand, 24733874 - 24733604
Alignment:
| Q |
183 |
gagagaaagcaaaataaaactgataccatattatgaataacagaaatagaatcatattattgatgaaagaattaaggagtacaggcaactgatgctatac |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
24733874 |
gagagaaagcaaaataaaactgataccatattatgaataacagaaatagaatcatattattgatgaaagaa----ggagtacatgcaactgatgctatac |
24733779 |
T |
|
| Q |
283 |
aatagaaatggtagactagcaatagcatatcatatcatggctaagacttaatctaaactgagttacttggagtctaagctatctaaatcactattgttat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24733778 |
aatagaaatggtagactagcaatagcatatcatatcatggctaagacttaatctaaactgagttacttggagtctaagctatctaaatcactattgttat |
24733679 |
T |
|
| Q |
383 |
gtaatactattaaacaacaaattaggaagaaacgtaaatgcaaaatatcaactaagccaaacccgcttgaatgtt |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
24733678 |
gtaatactattaaacaacaaattaggaagaaacgtaaatgcaaaatatcaactaagccaagcccacttgaatgtt |
24733604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 451 - 579
Target Start/End: Complemental strand, 24733560 - 24733432
Alignment:
| Q |
451 |
gaatgtttaggaaggaagaggtctagtgtaggacgttagatacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttg |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24733560 |
gaatgtttaggaaggaagaggtctagtgtaggacgttagatacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttg |
24733461 |
T |
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| Q |
551 |
atgatacaccaattcgaaaactgagagag |
579 |
Q |
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| T |
24733460 |
atgatacaccaattcgaaaactgagagag |
24733432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 449 - 578
Target Start/End: Original strand, 24648492 - 24648626
Alignment:
| Q |
449 |
ttgaatgtttaggaaggaagaggtctagtgtaggacgttaga-----tacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaa |
543 |
Q |
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||||||||||||||||||||| |||||||||| ||| | ||| ||| ||||||| |||||||| | ||| |||| ||||||||||||||||||||| |
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| T |
24648492 |
ttgaatgtttaggaaggaagaagtctagtgtacgacatgagagttgatacgccaattcaatgcagttagagtgacagaataaagtaaccactaaaacgaa |
24648591 |
T |
|
| Q |
544 |
tgagttgatgatacaccaattcgaaaactgagaga |
578 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
24648592 |
tgagttgatgatacaccaattcgagaactgagaga |
24648626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 502 - 579
Target Start/End: Original strand, 24693152 - 24693229
Alignment:
| Q |
502 |
gatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattcgaaaactgagagag |
579 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |
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| T |
24693152 |
gatgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagaactgagagag |
24693229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 489 - 565
Target Start/End: Original strand, 24720682 - 24720758
Alignment:
| Q |
489 |
gatacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattc |
565 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| |||||||| |
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| T |
24720682 |
gataaaccaattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaataagttaatgataaaccaattc |
24720758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 492 - 563
Target Start/End: Complemental strand, 18157824 - 18157753
Alignment:
| Q |
492 |
acaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaat |
563 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
18157824 |
acactaattcaatgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaat |
18157753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 502 - 576
Target Start/End: Original strand, 24641783 - 24641857
Alignment:
| Q |
502 |
gatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattcgaaaactgaga |
576 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||| | |||||| |
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| T |
24641783 |
gatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgaga |
24641857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 582 - 731
Target Start/End: Complemental strand, 15303072 - 15302926
Alignment:
| Q |
582 |
gaacaaaacaaaaatggttctcagaggagtggcctaagccgagtgatacaagaatgacaagtgacttgtcgagaaaaaacagggtgatgcttggtggata |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
15303072 |
gaacaaaacaaaaatggttctcagaggagtggcctaagccgagtgatacaagaatgacaagtgacttgtcgagaaaaaacagagtggtgcttggtggata |
15302973 |
T |
|
| Q |
682 |
tcctcctatttgtgagggttataccttgagtgaaacaaggatggtactca |
731 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||| ||||||| |
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| T |
15302972 |
---tcctatttgtgagggttatagcttgagcgaaacaaggatagtactca |
15302926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 492 - 563
Target Start/End: Complemental strand, 15282212 - 15282141
Alignment:
| Q |
492 |
acaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaat |
563 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
15282212 |
acactaattcaatgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaat |
15282141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 25226459 - 25226353
Alignment:
| Q |
82 |
ggaatcttcaagaaaacaagggaaaaacgaaaactggaaaagcttgaagaacaagcataaattgcggaaacggttatggatcgtaactaactttctcatg |
181 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||| ||||||| |
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| T |
25226459 |
ggaatcttcaagaaaacaacggaaaaacgaaaactggaaaagcttgaagaacaagcatcaatgacagaaacaattatggatcgtaactaactctctcatg |
25226360 |
T |
|
| Q |
182 |
agagaga |
188 |
Q |
| |
|
||||||| |
|
|
| T |
25226359 |
agagaga |
25226353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 492 - 563
Target Start/End: Complemental strand, 24223710 - 24223639
Alignment:
| Q |
492 |
acaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaat |
563 |
Q |
| |
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|||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
24223710 |
acactaattcaatgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaat |
24223639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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