View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_10 (Length: 324)
Name: NF16799_low_10
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 4476630 - 4476331
Alignment:
| Q |
16 |
ctattgcactttatttttatttttatatt--aagtttaagatttgtgggttcaaaatttgtccgtttctaagatccggtgttgagccacggtggtgttgt |
113 |
Q |
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| T |
4476630 |
ctattgtactttatttttatttttatattgtaagtttaagatttgtgggttcaaaatttgtccgtttctaagatccggtgttgagccacggtggtgttgt |
4476531 |
T |
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| Q |
114 |
ctatgttcactctcatcttgatgtttgcacatgcagcaaggttcaacttcaagatagtaatcacagttaacggtagaggcataatgcattaatgattgca |
213 |
Q |
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| T |
4476530 |
ctatgttcactctcatcttgatgtttgcacatgcagcaaggttcaacttcaagatagtaatcacagttaatggtacaggcataatgcattaatgattgca |
4476431 |
T |
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| Q |
214 |
ttgatttagtacatgattgttggtttcaacattccaatgaaacttagtgcaacctc----taatggatgcaacctggtactaatttgcagggatgcttgt |
309 |
Q |
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| T |
4476430 |
ttgttttagtacatg---------------attccaatgaaacttagtgcaacctctaattaatggatgcagcctggttttaatttgcagtgatgcttgt |
4476346 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 40682053 - 40681998
Alignment:
| Q |
227 |
tgattgttggtttcaacattccaatgaaacttagtgcaacctctaatggatgcaac |
282 |
Q |
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| T |
40682053 |
tgattgatggtttcaacattccaatgcagcttagttcaacctctaatgcatgcaac |
40681998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 40675789 - 40675721
Alignment:
| Q |
235 |
ggtttcaacattccaatgaaacttagtgcaacctctaatggatgcaacctggtactaatttgcagggat |
303 |
Q |
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| T |
40675789 |
ggtttcaacattccaatggaatttagttcaacttctaatggatgcaacaaagtactaacctgcagggat |
40675721 |
T |
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