View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16799_low_11 (Length: 275)
Name: NF16799_low_11
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_11 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 20343465 - 20343712
Alignment:
| Q |
18 |
aaaagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatcaagataaatgctgaaatatatgaaatttgtgcaatatatcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20343465 |
aaaagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatcaagataaatgctgaaatatatgaaatttgtgcaatatatcta |
20343564 |
T |
|
| Q |
118 |
actggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20343565 |
actggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcatg |
20343664 |
T |
|
| Q |
218 |
tccaaaatattgtcaaaccaaagtaagcagccactcccaccatctctg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20343665 |
tccaaaatattgtcaaaccaaagtaagcaaccactcccaccatctctg |
20343712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 5490023 - 5490266
Alignment:
| Q |
18 |
aaaagagaatttattagtgtcacatgatttcaactattcaa-caggacttaatactatcaagataaatgctgaaatatatgaaatttgtgcaatatatct |
116 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||| | ||||| ||| ||||||| |||||| | ||||| |||||||| |||||| ||| |||||||| |
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|
| T |
5490023 |
aaaagagaatttactagtgtcacgtaatttcaagttttcaaacagtgcttaataatatcaacacaaatggtgaaatatt--aaatttatgctatatatct |
5490120 |
T |
|
| Q |
117 |
aactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcat |
216 |
Q |
| |
|
||||| |||| |||| |||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
5490121 |
aactgaaaagacaaaatatgtaataagaaatgaaaataccaagttctgaagatgccatccgtatgtaaatgtcttgtccttggtcttgatgttttctcat |
5490220 |
T |
|
| Q |
217 |
gtccaaaatattgtcaaaccaaagtaagcagccactcccaccatct |
262 |
Q |
| |
|
||||| ||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
5490221 |
gtccacaatgttgttaaaccaaagtatgcagccactcccaccatct |
5490266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 5454846 - 5455092
Alignment:
| Q |
18 |
aaaagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatcaagataaatgctgaaatatatgaaatttgtgcaatatatcta |
117 |
Q |
| |
|
||||||||||||| |||||| || | ||||||| | |||| || ||||||| |||||||| ||||| |||||||||| || ||| ||| ||||||||| |
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|
| T |
5454846 |
aaaagagaatttactagtgtgacgtaatttcaagttttcagcaatgcttaataatatcaagacaaatggtgaaatatat-aagtttatgctatatatcta |
5454944 |
T |
|
| Q |
118 |
actggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcatg |
217 |
Q |
| |
|
|||| |||| |||| |||||||| |||| |||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
5454945 |
actgaaaagacaaaatatgtaataagaaaagaaaataccaagttctgaagatgccatccgtatgtaaatgtcttgtccttggtcttgatgttttctcatg |
5455044 |
T |
|
| Q |
218 |
tccaaaatattgtcaaaccaaagtaagcagccactcccaccatctctg |
265 |
Q |
| |
|
|||| ||| |||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
5455045 |
tccacaatgttgtgaaaccaaagtatgcagccactcccatcatctctg |
5455092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 66 - 265
Target Start/End: Original strand, 5502886 - 5503082
Alignment:
| Q |
66 |
taatactatcaagataaatgctgaaatatatgaaatttgtgcaatatatctaactggaaagga-aaaagatgtaataggaaatgaaaataccaagttctg |
164 |
Q |
| |
|
||||| |||||| | ||||| |||||||| | |||||| ||| ||||||||||| ||||||| |||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
5502886 |
taataatatcaacacaaatggtgaaatatgt-aaatttatgc--tatatctaact-gaaaggacaaaatatgtaatagcaaatgaaaataccaagctctg |
5502981 |
T |
|
| Q |
165 |
aagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcagccactcccaccatctct |
264 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5502982 |
aagatgccagccgtatgtaaatgtcttgtccttggtctggatgttttctcatgtcgacaatgttgtcaaaccaaagtaagcagccactcccaccatctct |
5503081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 5446287 - 5446520
Alignment:
| Q |
18 |
aaaagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatcaagataaatgctgaaatatatgaaatttgtgcaatatatcta |
117 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||| | ||||| ||||||| |||||| | ||||| |||||||| | |||||| ||| ||||||||| |
|
|
| T |
5446287 |
aaaagagaatttaatagtgtcacgtaatttcaagttttcaaggatgcttaataatatcaacacaaatggtgaaatatgt-aaatttatgctatatatcta |
5446385 |
T |
|
| Q |
118 |
actggaaagga-aaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcat |
216 |
Q |
| |
|
||| ||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
5446386 |
act-gaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttggtcttgatgtattctcat |
5446484 |
T |
|
| Q |
217 |
gtccaaaatattgtcaaaccaaagtaagcagccact |
252 |
Q |
| |
|
||| | ||| | ||||||||| |||||||||||||| |
|
|
| T |
5446485 |
gtcaacaatgtcgtcaaaccagagtaagcagccact |
5446520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 5854351 - 5854188
Alignment:
| Q |
102 |
ttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtc |
201 |
Q |
| |
|
|||||| ||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
5854351 |
ttgtgctatatatcagactgaaaaggcaaaagatgtaataggaaatgtaaataccaagttctgaagatgccagccgtatgaaaatgtcttgtccttggtc |
5854252 |
T |
|
| Q |
202 |
tcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcagccactcccaccatctctg |
265 |
Q |
| |
|
| ||||||||||||| || | ||| |||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
5854251 |
tggatgttttctcatatcaacaatgttgtcaaaccaaagtaagcagccacttccaacatatctg |
5854188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 5525757 - 5525919
Alignment:
| Q |
103 |
tgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtct |
202 |
Q |
| |
|
||||| ||||||||||||| |||||||||| |||| ||||||| | ||||||||||||||||||||||| | ||||| ||||||||||||||| ||| |
|
|
| T |
5525757 |
tgtgctatatatctaactgaaaaggaaaaatatgtgataggaagttaaaataccaagttctgaagatgccaatcgtatgtaaatgtcttgtcctacgtca |
5525856 |
T |
|
| Q |
203 |
cgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcagccactcccaccatctctg |
265 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5525857 |
ggatgttttctcatgtccacaatgttgttaaaccaaagtaagcagccactcccaccatctctg |
5525919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 265
Target Start/End: Complemental strand, 5828351 - 5828158
Alignment:
| Q |
72 |
tatcaagataaatgctgaa-atatatgaaatttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatg |
170 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||| | || ||||||||| | ||| |||| |||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
5828351 |
tatcaagacaaatgctgaatatatat-aaatttgtcctatgcatctaactgaagaggtaaaatatgtctttggaaatgaaaataccaagttcggaagatg |
5828253 |
T |
|
| Q |
171 |
ctagccgtatataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcagccactcccaccatctctg |
265 |
Q |
| |
|
| || ||||| ||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5828252 |
cgagtcgtatgtaaatgtcttgtcctacgtcaggatgttttctcatgtccacaatattgttaaaccaaagtaagcagccactcccaccatctctg |
5828158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 5484692 - 5484875
Alignment:
| Q |
81 |
aaatgctgaaatatatgaaatttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtat |
180 |
Q |
| |
|
||||| ||||||| || |||||||||| |||||||| |||| | || |||| |||| | |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5484692 |
aaatgatgaaataaat-aaatttgtgctatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtat |
5484790 |
T |
|
| Q |
181 |
ataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcagccactcccaccatctctg |
265 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484791 |
gtaaatttcttgtcctacgtcaggatgttttctcatgtccacaatgttgccaaaccaaagtaagcagccactcccaccatctctg |
5484875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 5849132 - 5848887
Alignment:
| Q |
20 |
aagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatcaagataaatgctgaaatatatgaaatttgtgc--aatatatcta |
117 |
Q |
| |
|
||||||||||| |||||||| | ||||||| | | |||||| ||||||| ||| |||| ||||||||||||||||| | |||||| |||||||| |
|
|
| T |
5849132 |
aagagaattta--agtgtcacctaatttcaagtttacaacagtgcttaataatatgaagaaaaatgctgaaatatatg-cacttgtgctatatatatctc |
5849036 |
T |
|
| Q |
118 |
actggaaaggaaaaagatgtaatagga-aatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcat |
216 |
Q |
| |
|
|||| |||| |||||||||||||||| | |||||||| |||||||||||||| || ||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
5849035 |
actgacaaggcaaaagatgtaataggatacaaaaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcctatgtcaggatgttttctcat |
5848936 |
T |
|
| Q |
217 |
gtccaaaatattgtcaaaccaaagtaagcagccactcccaccatctctg |
265 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5848935 |
gtccacaatgttgttaaaccaaagtaagcagccactcccaccatctctg |
5848887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 148 - 261
Target Start/End: Complemental strand, 5802607 - 5802494
Alignment:
| Q |
148 |
gaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcag |
247 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
5802607 |
gaaaataccaagttctgaagatgcgagtcgtatgtaaatgtcttgtcctacgtctggatgttttctcatgtccataatattgttaaaccaaagtaagcag |
5802508 |
T |
|
| Q |
248 |
ccactcccaccatc |
261 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
5802507 |
ccactaccaccatc |
5802494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 25809525 - 25809292
Alignment:
| Q |
18 |
aaaagagaatttattagtgtcacatgatttcaactattcaacaggacttaatactatcaagataaatgctgaaatatatgaaatttgtgcaatatatcta |
117 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||| | ||||| ||||||| |||||| | ||||| |||||||| | |||||| ||| ||||||||| |
|
|
| T |
25809525 |
aaaagagaatttaatagtgtcacgtaatttcaagttttcaaggatgcttaataatatcaacacaaatggtgaaatatgt-aaatttatgctatatatcta |
25809427 |
T |
|
| Q |
118 |
actggaaagga-aaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtatataaatgtcttgtccttggtctcgatgttttctcat |
216 |
Q |
| |
|
|||| |||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
25809426 |
actg-aaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttggtcttgatgtattctcat |
25809328 |
T |
|
| Q |
217 |
gtccaaaatattgtcaaaccaaagtaagcagccact |
252 |
Q |
| |
|
||| | ||| | ||||||||| |||||||||||||| |
|
|
| T |
25809327 |
gtcaacaatgtcgtcaaaccagagtaagcagccact |
25809292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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