View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_12 (Length: 252)
Name: NF16799_low_12
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_12 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 13631135 - 13631376
Alignment:
| Q |
17 |
aatatgtacgtaaaatttgttacttcaattatagtggatcattctctactttata------tatatagggctctccaatgctaaaaccagcagtgaagta |
110 |
Q |
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| T |
13631135 |
aatatgtacgtaaaatttgttactttaattatagtggatcattttctactttatatatatatatatagggctctccaatgctaaaaccagcagtgaagta |
13631234 |
T |
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| Q |
111 |
tttgacatatagatcatttggtgctcctgcggttcttctctcattggcaatgcaaggaatatttcgaggatttaaggacacaacaactcctttatatgtc |
210 |
Q |
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| T |
13631235 |
tttgacatatagatcatttggtgctcctgcggttcttctctcattggcaatgcaaggaatatttcgaggatttaaggacacaacaactcctttatatgtc |
13631334 |
T |
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| Q |
211 |
attggtatgattttactctctttaattccattgcaaaaaata |
252 |
Q |
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| T |
13631335 |
attggtatgattttactctctttaattccattgcaaaaaata |
13631376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 13731547 - 13731788
Alignment:
| Q |
17 |
aatatgtacgtaaaatttgttacttcaattatagtggatcattctctactttata------tatatagggctctccaatgctaaaaccagcagtgaagta |
110 |
Q |
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| T |
13731547 |
aatatgtacgtaaaatttgttactttaattatagtggatcattttctactttatatatatatatatagggctctccaatgctaaaaccagcagtgaagta |
13731646 |
T |
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| Q |
111 |
tttgacatatagatcatttggtgctcctgcggttcttctctcattggcaatgcaaggaatatttcgaggatttaaggacacaacaactcctttatatgtc |
210 |
Q |
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| T |
13731647 |
tttgacatatagatcatttggtgctcctgcggttcttctctcattggcaatgcaaggaatatttcgaggatttaaggacacaacaactcctttatatgtc |
13731746 |
T |
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| Q |
211 |
attggtatgattttactctctttaattccattgcaaaaaata |
252 |
Q |
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| T |
13731747 |
attggtatgattttactctctttaattccattgcaaaaaata |
13731788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 13750065 - 13750195
Alignment:
| Q |
82 |
tctccaatgctaaaaccagcagtgaagtatttgacatatagatcatttggtgctcctgcggttcttctctcattggcaatgcaaggaatatttcgaggat |
181 |
Q |
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| T |
13750065 |
tctcctatgctaaaaccagcagtgaaatacttaagattgagagcatttggttctcctgccgttcttctctcattggcaatgcaaggaatctttagagggt |
13750164 |
T |
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| Q |
182 |
ttaaggacacaacaactcctttatatgtcat |
212 |
Q |
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| T |
13750165 |
tcaaagatgtaacaactcctttatatgtcat |
13750195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 41821187 - 41821098
Alignment:
| Q |
130 |
ggtgctcctgcggttcttctctcattggcaatgcaaggaatatttcgaggatttaaggacacaacaactcctttatatgtcattggtatg |
219 |
Q |
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| T |
41821187 |
ggtgctcctgcggttcttctttcattggcgatgcagggagtttttcgaggatttaaagacactaaaactcctttatatgccactggtatg |
41821098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 9277411 - 9277498
Alignment:
| Q |
130 |
ggtgctcctgcggttcttctctcattggcaatgcaaggaatatttcgaggatttaaggacacaacaactcctttatatgtcattggta |
217 |
Q |
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| T |
9277411 |
ggtgctcctgcagtgcttctctccttggccatgcaaggaatctttagagggttcaaagacacaacaactcctttatatgtcatcggta |
9277498 |
T |
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