View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_13 (Length: 250)
Name: NF16799_low_13
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 56020360 - 56020597
Alignment:
| Q |
1 |
tcaggttcagacaccaacatgcaaatgctaagacatacttaaaaatggatttagttttaaagaaactattcaaactaaatatttacccatgcaactaagt |
100 |
Q |
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| T |
56020360 |
tcagggtcagacaccaacatgcaaatgctaagacatacttaaaaatggatttagttttaaagaaactattcaaactaaatatttacccatgcaactaagt |
56020459 |
T |
|
| Q |
101 |
attgctcccctgcttccctactagtatccagggctctacgtccggtgatcagttccagcaaaaccacaccaaaactgtagatatcggattgtttagttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56020460 |
attgctcccctgcttccctactagtatccagggctctacgtccggttatcagttccagcaaaaccacaccaaaactgtagatatcggattgtttagttaa |
56020559 |
T |
|
| Q |
201 |
tttgccagtcatagcatattctagtgcacaatagcctt |
238 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
56020560 |
tttgccagtcatagcatattctagtgcgcaatagcctt |
56020597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 6156129 - 6156296
Alignment:
| Q |
71 |
caaactaaatatttacccatgcaactaagtattgctcccctgcttccctactagtatccagggctctacgtccggtgatcagttccagcaaaaccacacc |
170 |
Q |
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|||||||||| |||||||||| | ||||| | |||| |||||| |||| | |||| || ||||||||||| ||||||| || |||||||||| ||| |
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| T |
6156129 |
caaactaaatttttacccatgacattaagtgtcgctctcctgctcttctacgattatctagtgctctacgtccagtgatcaactctagcaaaaccatacc |
6156228 |
T |
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| Q |
171 |
aaaactgtagatatcggattgtttagttaatttgccagtcatagcatattctagtgcacaatagcctt |
238 |
Q |
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| T |
6156229 |
aaaactatagatatcagattgtcgggttaatttgccagtcttcgcatattctggtgcacagtagcctt |
6156296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 54031743 - 54031956
Alignment:
| Q |
12 |
caccaacatgcaaatgctaagaca----tacttaaaaatggatttagttttaaagaaactattcaaactaaatatttacccatgcaactaagtattgctc |
107 |
Q |
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|||||||||||||| ||||||||| ||||| ||| ||||||| ||||||| ||| ||| | ||||||||||||||||||| |||||||| |||||| |
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| T |
54031743 |
caccaacatgcaaa-gctaagacaaatatacttgaaagaggatttatttttaaataaattatacgaactaaatatttacccatgaaactaagttttgctc |
54031841 |
T |
|
| Q |
108 |
ccctgcttccctactagtatccagggctctacgtccggtgatcagttccagcaaaaccacaccaaaactgtagatatcggattgtttagttaatttgcca |
207 |
Q |
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|||| || |||||| ||| | || || ||||| || |||| |||| ||||||||||||||| ||||||||||| || | ||||||||||||| |
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| T |
54031842 |
tcctggttttttactagcatctattgcccttcgtccagtaatcaactccaacaaaaccacaccaaagctgtagatatcagacttaagagttaatttgcca |
54031941 |
T |
|
| Q |
208 |
gtcatagcatattct |
222 |
Q |
| |
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|||| ||||||||| |
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| T |
54031942 |
ctcatcgcatattct |
54031956 |
T |
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