View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_16 (Length: 238)
Name: NF16799_low_16
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 6336508 - 6336666
Alignment:
| Q |
71 |
tgatgaaaactctcgacaacactttaggtgnnnnnnnnatctttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggttgtttttatag |
170 |
Q |
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| T |
6336508 |
tgatgaaaactctcgacaacactttagtt-ttttttttatctttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggttgtttttatag |
6336606 |
T |
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| Q |
171 |
gcatgaaaagttaataggctttggtcaagcattgaaaagtacaacactgcatgatgatgt |
230 |
Q |
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| T |
6336607 |
gcatgaaaagttaatagggtttggtcaagcattgaaaagtacaacactgcatgatgatgt |
6336666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 71 - 229
Target Start/End: Original strand, 6351493 - 6351650
Alignment:
| Q |
71 |
tgatgaaaactctcgacaacactttaggtgnnnnnnnnatctttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggttgtttttatag |
170 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351493 |
tgatgaaaactctcgacaacactttagtt-ttttttttatctttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggttgtttttatag |
6351591 |
T |
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| Q |
171 |
gcatgaaaagttaataggctttggtcaagcattgaaaagtacaacactgcatgatgatg |
229 |
Q |
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| T |
6351592 |
gcatgaaaagttaatagggtttggtcaagcattgaaaagtacaacactgcatgatgatg |
6351650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 6328966 - 6329099
Alignment:
| Q |
109 |
atctttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggtt------------gtttttataggcatgaaaagttaataggctttggtc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
6328966 |
atctttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggttaagggtgtggttgtttttataggcatgaaaagttaatagggtttggtc |
6329065 |
T |
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| Q |
197 |
aagcattgaaaagtacaacactgcatgatgatgt |
230 |
Q |
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| T |
6329066 |
aagcaatgaaaagtacaacgctgcatgatgatgt |
6329099 |
T |
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