View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_18 (Length: 221)
Name: NF16799_low_18
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_18 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 6808169 - 6807958
Alignment:
| Q |
10 |
atcatcaattgtccaaataacaatacgcagagtgagtagcaaacacgagaaggaaaacaatccaatccaaattttaagcaccgttgaaagtaaattctca |
109 |
Q |
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| T |
6808169 |
atcattaattgtccaaataagaatacgcagagtgagtaacaaacccgagatggaaaacaatccaatccaaattttaagcaccgttgaaagtaatttctca |
6808070 |
T |
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| Q |
110 |
ttaatactatatacaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagacatccccatagataaaagcc |
209 |
Q |
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| T |
6808069 |
ttaatactatatacaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagacatccccatagataaaagcc |
6807970 |
T |
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| Q |
210 |
acatagtaaacc |
221 |
Q |
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|||||||||||| |
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| T |
6807969 |
acatagtaaacc |
6807958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 6836096 - 6835897
Alignment:
| Q |
22 |
ccaaataacaatacgcagagtgagtagcaaacacgagaaggaaaacaatccaatccaaattttaagcaccgttgaaagtaaattctcattaatactatat |
121 |
Q |
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|||||||| ||||||||| ||||||| |||| |||||| |||||||||||||||||||| ||||| |||||||||||| ||||||| | | |
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| T |
6836096 |
ccaaataataatacgcagtgtgagtaagaaacccgagaaagaaaacaatccaatccaaatacgaagcaatgttgaaagtaaaacctcattatcagcccag |
6835997 |
T |
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| Q |
122 |
acaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagacatccccatagataaaagccacatagtaaacc |
221 |
Q |
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| T |
6835996 |
acaggatctggggtaaccattaatattgctattcggtaagtaacaagaagagatgtgagagtgaaacacatgctaatagaaaaaagccacatagtaaacc |
6835897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 6634045 - 6633946
Alignment:
| Q |
122 |
acaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagacatccccatagataaaagccacatagtaaacc |
221 |
Q |
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| T |
6634045 |
acaggaactggggtaaccattaatattgctattcggtaagtaacaagaagagatgtgagagtgaaacacatgctaatagaaaaaagccacatagtaaacc |
6633946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 6632935 - 6632736
Alignment:
| Q |
22 |
ccaaataacaatacgcagagtgagtagcaaacacgagaaggaaaacaatccaatccaaattttaagcaccgttgaaagtaaattctcattaatactatat |
121 |
Q |
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| T |
6632935 |
ccaaataataatacgcagtgtgagtaacaaacccgagaaggaaaacaatcccatccaaatataaagcaacgttgaaagaaaatccaacgtatcatcccag |
6632836 |
T |
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| Q |
122 |
acaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaagacatccccatagataaaagccacatagtaaacc |
221 |
Q |
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| T |
6632835 |
agaatatctggggtaatcattcctactgctatgtcgtaagtaacaagaagagatgtgagagtgaaacacatccctatagatacaagccacatagtaaacc |
6632736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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