View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16799_low_19 (Length: 220)

Name: NF16799_low_19
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16799_low_19
NF16799_low_19
[»] chr2 (12 HSPs)
chr2 (18-202)||(11171189-11171373)
chr2 (75-179)||(11145321-11145425)
chr2 (68-187)||(11137015-11137134)
chr2 (68-198)||(11177245-11177375)
chr2 (59-197)||(11155622-11155760)
chr2 (75-179)||(11149255-11149359)
chr2 (88-201)||(11104188-11104301)
chr2 (68-176)||(10794016-10794124)
chr2 (75-201)||(11095716-11095842)
chr2 (75-197)||(11191871-11191993)
chr2 (68-197)||(11110163-11110292)
chr2 (147-202)||(11184827-11184882)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11171189 - 11171373
Alignment:
Q  18 atcttgttgaataccacttctacgatcacaagtgagcaaacagcttttggaaataacaactcaataagaggtttggatgttgtgaatcaaatcaaaacag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11171189 atcttgttgaataccacttctacgatcacaagtgagcaaacagcttttggaaataacaactcaataagaggtttagatgttgtgaatcaaatcaaaacag 11171288  T
Q  118 cagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctgctgaaatttcctctgttctggtatgttc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11171289 cagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctgctgaaatttcctctgttctggtatgttc 11171373  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 11145321 - 11145425
Alignment:
Q  75 aactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctg 174  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||    
T  11145321 aactcattgagaggtttggatgttgtgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattcttgctcttgctg 11145420  T
Q  175 ctgaa 179  Q
    |||||    
T  11145421 ctgaa 11145425  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 11137015 - 11137134
Alignment:
Q  68 aaataacaactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgct 167  Q
    ||||| ||||||  || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||     
T  11137015 aaatatcaactctctacgaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattcttgcc 11137114  T
Q  168 cttgctgctgaaatttcctc 187  Q
    ||| ||||  ||||||||||    
T  11137115 ctttctgcacaaatttcctc 11137134  T

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Target: chr2; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 11177245 - 11177375
Alignment:
Q  68 aaataacaactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgct 167  Q
    |||||||||||| |||||||||||||| ||  | || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  11177245 aaataacaactccataagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgcc 11177344  T
Q  168 cttgctgctgaaatttcctctgttctggtat 198  Q
    ||| |||||||||| || |||| ||||||||    
T  11177345 ctttctgctgaaatatcttctgatctggtat 11177375  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 11155622 - 11155760
Alignment:
Q  59 agcttttggaaataacaactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgat 158  Q
    |||||||  ||||||||||||  ||||||||||||||||||| ||||| |||||||| ||  | |||| ||||||||||||||| |||||||||||||||    
T  11155622 agcttttccaaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgat 11155721  T
Q  159 attcttgctcttgctgctgaaatttcctctgttctggta 197  Q
    |||||||||||||||||| ||   |||||||||||||||    
T  11155722 attcttgctcttgctgctcaagcatcctctgttctggta 11155760  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 11149255 - 11149359
Alignment:
Q  75 aactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctg 174  Q
    |||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||| |||    
T  11149255 aactcattaagaggtttagatgttgtgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattcttgccctttctg 11149354  T
Q  175 ctgaa 179  Q
    |||||    
T  11149355 ctgaa 11149359  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 11104188 - 11104301
Alignment:
Q  88 gtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctgctgaaatttcctc 187  Q
    ||||||||||||||||| ||||||| |||||||| ||| | |  ||||||||||||||||||||||||||||||||| || |||| |||||| | || ||    
T  11104188 gtttggatgttgtgaataaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttc 11104287  T
Q  188 tgttctggtatgtt 201  Q
    | ||||||||||||    
T  11104288 tattctggtatgtt 11104301  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 10794124 - 10794016
Alignment:
Q  68 aaataacaactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgct 167  Q
    ||||| |||||| |||||||||||| | ||||||||||  ||||| ||||  |||||||| ||||| ||||| || |||||||||||||||||||||||     
T  10794124 aaatatcaactccataagaggtttgcaagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctgatattcttgca 10794025  T
Q  168 cttgctgct 176  Q
    |||||||||    
T  10794024 cttgctgct 10794016  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 11095716 - 11095842
Alignment:
Q  75 aactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctg 174  Q
    |||||| |||| |||||||||||||| || |||||||| |||||||| |||||||  |||||   ||||||||||||||||||||||||| || |||| |    
T  11095716 aactcattaaggggtttggatgttgtaaaccaaatcaagacagcagttgaaaatgaatgtccagccactgtttcttgtgctgatattcttactattgcag 11095815  T
Q  175 ctgaaatttcctctgttctggtatgtt 201  Q
    || || |  | ||||||||||||||||    
T  11095816 ctcaagtagcttctgttctggtatgtt 11095842  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 11191993 - 11191871
Alignment:
Q  75 aactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctg 174  Q
    ||||||||||||||||||||| ||||||||||||||||| | ||| | |||  |||||||||||    ||| |||||||| ||||||||||| |||| ||    
T  11191993 aactcaataagaggtttggatattgtgaatcaaatcaaagccgcaatcgaacttgcttgtcctagtgttgtgtcttgtgcagatattcttgcacttggtg 11191894  T
Q  175 ctgaaatttcctctgttctggta 197  Q
    || |  ||||||| |||||||||    
T  11191893 ctaatgtttcctccgttctggta 11191871  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 11110163 - 11110292
Alignment:
Q  68 aaataacaactcaataagaggtttggatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgct 167  Q
    ||||| ||||||  ||||||| ||||||||| | ||||||||||| ||   ||||||||| ||||| ||||| |  ||||||||||||||||||||| |     
T  11110163 aaatatcaactccttaagaggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttaca 11110262  T
Q  168 cttgctgctgaaatttcctctgttctggta 197  Q
    |||||  ||| ||| || ||||||||||||    
T  11110263 cttgcgtctggaatatcttctgttctggta 11110292  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 11184882 - 11184827
Alignment:
Q  147 tcttgtgctgatattcttgctcttgctgctgaaatttcctctgttctggtatgttc 202  Q
    |||||||||||||||||||| |||| |||| | |||||||| ||||||||||||||    
T  11184882 tcttgtgctgatattcttgcacttggtgctaacatttcctcagttctggtatgttc 11184827  T

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