View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16799_low_2 (Length: 771)
Name: NF16799_low_2
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 558; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 176 - 765
Target Start/End: Original strand, 6350867 - 6351456
Alignment:
| Q |
176 |
cttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacac |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6350867 |
cttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacac |
6350966 |
T |
|
| Q |
276 |
caaaaacaagcatgccacgtaagccagcttcattaacagcccttatactctttccagcagtaatagcatcttctccagcacaaaaatgttcatagaatgt |
375 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6350967 |
caaaaacaagcatgccacgtaagccagcttcattaacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaatgttcatagaatgt |
6351066 |
T |
|
| Q |
376 |
tctctttgtaactgccataactgcatctttcaatattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgacaggtcctatagcc |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6351067 |
tctctttgtaactgccataactgcatctttcaatattcccgtttgtaacaattttgattgcatagcccatattccaacgtccactacaggtcctatagcc |
6351166 |
T |
|
| Q |
476 |
gttgcatgcaggacggctgaggatcttatcagcgtggacgttggaacagctgagaataatctctcaccgtcgtttaggtcgaggtaagacggttgttagt |
575 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| || |
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| T |
6351167 |
gttgcatgcagaacggctgaggatcttatcagcgtggacgttggaacagctgagaataatctctcaccgtcgtttaggtcaagataagatggttgttggt |
6351266 |
T |
|
| Q |
576 |
gtgacggttgtggtggagaaggttgttctctttcgagaagggaagcgacggcggcggtggccgaaggatgggaggagtttaatggttttgtggtggtttt |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351267 |
gtgacggttgtggtggagaaggttgttctctttcgagaagggaagcgacggcggcggtggccgaaggatgggaggagtttaatggttttgtggtggtttt |
6351366 |
T |
|
| Q |
676 |
gaaacggagattcttgattatcttttgtgggaccacacgagttgccattcaataacaagaaaatttgagatttgagattcttgatgatgt |
765 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6351367 |
gaaacggagattcttgatgatcttttgtgggaccacacgagttgccattcaataacaagaaaatttgagatttgagattcttgatgatgt |
6351456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 176 - 765
Target Start/End: Original strand, 6335882 - 6336471
Alignment:
| Q |
176 |
cttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacac |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6335882 |
cttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacac |
6335981 |
T |
|
| Q |
276 |
caaaaacaagcatgccacgtaagccagcttcattaacagcccttatactctttccagcagtaatagcatcttctccagcacaaaaatgttcatagaatgt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6335982 |
caaaaacaagcatgccacgtaagccagcttcattaacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaatgttcatagaatgt |
6336081 |
T |
|
| Q |
376 |
tctctttgtaactgccataactgcatctttcaatattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgacaggtcctatagcc |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6336082 |
tctctttgtaactgccataactgcatctttcaagattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgacaggtcctatagcc |
6336181 |
T |
|
| Q |
476 |
gttgcatgcaggacggctgaggatcttatcagcgtggacgttggaacagctgagaataatctctcaccgtcgtttaggtcgaggtaagacggttgttagt |
575 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| || |
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|
| T |
6336182 |
gttgcatgcagaacggctgaggatcttatcagcgtggacgttggaacagctgagaataatctctcaccgtcgtttaggtcaagataagatggttgttggt |
6336281 |
T |
|
| Q |
576 |
gtgacggttgtggtggagaaggttgttctctttcgagaagggaagcgacggcggcggtggccgaaggatgggaggagtttaatggttttgtggtggtttt |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6336282 |
gtgacggttgtggtggagaaggttgttctctttcaataagggaagcgacggcggcggtggccgaaggatgggaggagtttaatggttttgtggtggtttt |
6336381 |
T |
|
| Q |
676 |
gaaacggagattcttgattatcttttgtgggaccacacgagttgccattcaataacaagaaaatttgagatttgagattcttgatgatgt |
765 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6336382 |
gaaacggagattcttgatgatcttttgtgggaccacacgagttgccattcaataacaagaaaatttgagatttgagattcttgatgatgt |
6336471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 176 - 743
Target Start/End: Original strand, 6328324 - 6328891
Alignment:
| Q |
176 |
cttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacac |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6328324 |
cttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacac |
6328423 |
T |
|
| Q |
276 |
caaaaacaagcatgccacgtaagccagcttcattaacagcccttatactctttccagcagtaatagcatcttctccagcacaaaaatgttcatagaatgt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6328424 |
caaaaacaagcatgccacgtaagccagcttcattaacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaatgttcatagaatgt |
6328523 |
T |
|
| Q |
376 |
tctctttgtaactgccataactgcatctttcaatattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgacaggtcctatagcc |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6328524 |
tctctttgtaactgccataactgcatctttcaagattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgacaggtcctatagcc |
6328623 |
T |
|
| Q |
476 |
gttgcatgcaggacggctgaggatcttatcagcgtggacgttggaacagctgagaataatctctcaccgtcgtttaggtcgaggtaagacggttgttagt |
575 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| || |
|
|
| T |
6328624 |
gttgcatgcagaacggctgaggatcttatcagcgtggacgttggaacagctgagaataatctctcaccgtcgtttaggtcaagataagatggttgttggt |
6328723 |
T |
|
| Q |
576 |
gtgacggttgtggtggagaaggttgttctctttcgagaagggaagcgacggcggcggtggccgaaggatgggaggagtttaatggttttgtggtggtttt |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
6328724 |
gtgacggttgtggtggagaaggttgttctctttcgagaatggaggcgacggtggcggtggctgaaggatggtaggagtttaatggttttgtggtggtttt |
6328823 |
T |
|
| Q |
676 |
gaaacggagattcttgattatcttttgtgggaccacacgagttgccattcaataacaagaaaatttga |
743 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
6328824 |
gaaacggagattcttgatgattttttgtgggaccacacgagttgccattcaaaaacaagaaattttga |
6328891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 6335725 - 6335824
Alignment:
| Q |
20 |
ccacgctacattattagacaaaattaatttgaccaaaacctcttttctttaaacaaaaacaaacaaatctttaattaatctaaacagatcttaaacaatt |
119 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6335725 |
ccacgctacattatacgaccaaattaatttgaccaaaacctcttctctttaaataaaaacaaacaaatctttaattaatctaaacagatcttaaccaatt |
6335824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 6328173 - 6328266
Alignment:
| Q |
26 |
tacattattagacaaaattaatttgaccaaaacctcttttctttaaacaaaaacaaacaaatctttaattaatctaaacagatcttaaacaatt |
119 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6328173 |
tacattatacgaccaaattaatttgaccaaaacctcttttctttaaataaaaacaaacaaatctttaattaatctaaacagatcttaaccaatt |
6328266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 6350709 - 6350809
Alignment:
| Q |
20 |
ccacgctacattattagacaaaattaatttgaccaaaa-cctcttttctttaaacaaaaacaaacaaatctttaattaatctaaacagatcttaaacaat |
118 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6350709 |
ccacgctacattatacgaccaaattaatttgaccaaaaacctcttttctttaaataaaaacaaacaaatctttaattaatctaaacagatcttaaccaat |
6350808 |
T |
|
| Q |
119 |
t |
119 |
Q |
| |
|
| |
|
|
| T |
6350809 |
t |
6350809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 177 - 363
Target Start/End: Complemental strand, 6489141 - 6488955
Alignment:
| Q |
177 |
ttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacacc |
276 |
Q |
| |
|
|||| ||||| |||||||| ||| |||| |||||||| || |||||||| ||||| ||||| |||||||| ||| |||| ||||| ||||||||||| || |
|
|
| T |
6489141 |
ttaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcattatcatgagcatcttcaacgcc |
6489042 |
T |
|
| Q |
277 |
aaaaacaagcatgccacgtaagccagcttcattaacagcccttatactctttccagcagtaatagcatcttctccagcacaaaaatg |
363 |
Q |
| |
|
| |||| ||||| |||||||| || |||||||| | | ||||| |||||||| || |||||||||||||| ||||||||||| |
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|
| T |
6489041 |
ataaaccagcattccacgtaaacctgcttcattcaacccggcaatactttttccagcggtgatagcatcttctccggcacaaaaatg |
6488955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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