View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_20 (Length: 212)
Name: NF16799_low_20
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 16859786 - 16859607
Alignment:
| Q |
18 |
aataccctcggc-tttgtgttgattcatggggcattttctaaacagctacttggatcttttatttggacaatgttcctttgtaaactctgccaaaaccac |
116 |
Q |
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| T |
16859786 |
aataccctcggcctttgtgttgattcatggttcattttctaaacagctacttggatcttttattttgacaatgttcctttgtaaactctgccaaaaccac |
16859687 |
T |
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| Q |
117 |
ccgtcccaaataactctttctccttgaaaccttcaaaccttttgtagctttgttgagctcttgataggacttaggagtat |
196 |
Q |
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| T |
16859686 |
ccgtcccaaataactctttctccttgaaaccttcaaaccttttgtagctttgttgagctcttgataggacttaggagtat |
16859607 |
T |
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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 15627689 - 15627781
Alignment:
| Q |
85 |
caatgttcctttgtaaactctgccaaaaccacccgtcccaaataactctttctccttgaaaccttcaaaccttttgtagctttgttgagctcttgatagg |
184 |
Q |
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| T |
15627689 |
caatgtccctttgtaaactcttccaaaaccaccctgcccaagtagctctttctccttg--------aaaccttttgtagctttgttgagctcttgatagg |
15627780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 22934004 - 22933913
Alignment:
| Q |
58 |
aacagctacttggatcttttatttggacaatgttcctttgtaaactctgccaaaaccacccgtcccaaataactctttctccttgaaacctt |
149 |
Q |
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| T |
22934004 |
aacagccacttgaatcttcgatttcggcaatattccattgtaaactttcccaaaaccaccctgcccaagcaactctttctccttgaaacctt |
22933913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 22921587 - 22921678
Alignment:
| Q |
58 |
aacagctacttggatcttttatttggacaatgttcctttgtaaactctgccaaaaccacccgtcccaaataactctttctccttgaaacctt |
149 |
Q |
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|||||| ||||| ||||| |||| | |||| | || ||||||||| |||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
22921587 |
aacagccacttgaatcttcgatttcggcaatatcccattgtaaactttgccaaaaccaccctgcccaagcaactgtttctccttgaaacctt |
22921678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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