View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16799_low_21 (Length: 210)

Name: NF16799_low_21
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16799_low_21
NF16799_low_21
[»] chr2 (3 HSPs)
chr2 (64-163)||(30731770-30731869)
chr2 (133-182)||(8979051-8979100)
chr2 (129-188)||(8995546-8995605)
[»] chr1 (5 HSPs)
chr1 (68-163)||(14669959-14670054)
chr1 (64-187)||(14664378-14664510)
chr1 (66-150)||(14676440-14676524)
chr1 (66-150)||(14683558-14683642)
chr1 (64-147)||(14654587-14654670)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 30731869 - 30731770
Alignment:
Q  64 atagagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcattaatgcataagtaaaa 163  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  30731869 atagagcccactaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatggtaatggtaatggtcattaaagcataagtaaaa 30731770  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 8979100 - 8979051
Alignment:
Q  133 aatggtagtggtcattaatgcataagtaaaagtaaagttgaagaattaaa 182  Q
    ||||||| ||| |||||||||||| |||||| ||||||||||||||||||    
T  8979100 aatggtaatggccattaatgcataggtaaaactaaagttgaagaattaaa 8979051  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 8995605 - 8995546
Alignment:
Q  129 tggtaatggtagtggtcattaatgcataagtaaaagtaaagttgaagaattaaaaattaa 188  Q
    |||| |||||||||| ||||||||||||  ||||| ||||||||||||||| || |||||    
T  8995605 tggtgatggtagtggccattaatgcatagataaaactaaagttgaagaattgaagattaa 8995546  T

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Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 14669959 - 14670054
Alignment:
Q  68 agcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcattaatgcataagtaaaa 163  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  14669959 agcccactaaagcatttcaccaattcatccattagaacttgcatcacctagaaacaatcaatggtaatggtaatggtcattaaagcataagtaaaa 14670054  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 14664378 - 14664510
Alignment:
Q  64 atagagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatgg---------tagtggtcattaatgca 154  Q
    |||||| ||||||||| ||||||| |||||||| |||| ||| |||||||||||||||||||||||| ||||||         |||||||||||||||||    
T  14664378 atagaggccactaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatgataatggtagtggtcatagtggtcattaatgca 14664477  T
Q  155 taagtaaaagtaaagttgaagaattaaaaatta 187  Q
    ||||||||| ||||||||| |||||||| ||||    
T  14664478 taagtaaaactaaagttgaggaattaaagatta 14664510  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 14676524 - 14676440
Alignment:
Q  66 agagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcattaa 150  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  14676524 agagcccactaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatggtgattgtagcggtcattaa 14676440  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 14683642 - 14683558
Alignment:
Q  66 agagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcattaa 150  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  14683642 agagcccactaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatggtgattgtagcggtcattaa 14683558  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 14654587 - 14654670
Alignment:
Q  64 atagagcccactaaagaatttcactaattcatctattagaacttgcatcagctagaaacaatcaatggtaatggtagtggtcat 147  Q
    |||||| ||||||||| ||||||| |||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  14654587 atagaggccactaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatgataatggtagtggtcat 14654670  T

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