View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16799_low_22 (Length: 206)

Name: NF16799_low_22
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16799_low_22
NF16799_low_22
[»] chr1 (78 HSPs)
chr1 (1-192)||(11880267-11880458)
chr1 (1-192)||(11902767-11902958)
chr1 (3-191)||(11902576-11902764)
chr1 (3-191)||(11880076-11880264)
chr1 (2-192)||(11902671-11902861)
chr1 (2-192)||(11880171-11880361)
chr1 (26-191)||(11879836-11880001)
chr1 (80-192)||(11880363-11880475)
chr1 (80-192)||(11902863-11902975)
chr1 (2-191)||(11879980-11880169)
chr1 (2-191)||(11902480-11902669)
chr1 (80-191)||(11889820-11889931)
chr1 (4-95)||(11879836-11879927)
chr1 (80-183)||(52820906-52821009)
chr1 (20-192)||(11879931-11880103)
chr1 (11-189)||(52820933-52821111)
chr1 (122-191)||(11879788-11879857)
chr1 (29-191)||(11889484-11889646)
chr1 (128-186)||(11889777-11889835)
chr1 (107-191)||(11904942-11905026)
chr1 (116-186)||(11882006-11882076)
chr1 (116-186)||(11891240-11891310)
chr1 (2-95)||(11889820-11889913)
chr1 (110-191)||(11905182-11905263)
chr1 (65-189)||(52821227-52821351)
chr1 (107-189)||(11879625-11879707)
chr1 (29-191)||(11888188-11888350)
chr1 (29-191)||(11888236-11888398)
chr1 (29-191)||(11888284-11888446)
chr1 (29-191)||(11888332-11888494)
chr1 (29-191)||(11888380-11888542)
chr1 (29-191)||(11888428-11888590)
chr1 (29-191)||(11888476-11888638)
chr1 (29-191)||(11888524-11888686)
chr1 (29-191)||(11888572-11888734)
chr1 (29-191)||(11888620-11888782)
chr1 (29-191)||(11888668-11888830)
chr1 (29-191)||(11888716-11888878)
chr1 (29-191)||(11888764-11888926)
chr1 (29-191)||(11888812-11888974)
chr1 (29-191)||(11888860-11889022)
chr1 (29-191)||(11888908-11889070)
chr1 (29-191)||(11888956-11889118)
chr1 (29-191)||(11889004-11889166)
chr1 (29-191)||(11889052-11889214)
chr1 (29-191)||(11889100-11889262)
chr1 (29-191)||(11889148-11889310)
chr1 (29-191)||(11889196-11889358)
chr1 (29-191)||(11889244-11889406)
chr1 (29-191)||(11889292-11889454)
chr1 (29-191)||(11889340-11889502)
chr1 (125-171)||(11889648-11889694)
chr1 (122-191)||(11879671-11879740)
chr1 (26-95)||(11879788-11879857)
chr1 (110-186)||(11882390-11882466)
chr1 (110-186)||(11891624-11891700)
chr1 (107-186)||(11905475-11905554)
chr1 (119-186)||(52821137-52821204)
chr1 (107-189)||(11882675-11882757)
chr1 (29-95)||(11889628-11889694)
chr1 (116-186)||(11904803-11904873)
chr1 (26-191)||(11879575-11879740)
chr1 (23-191)||(52818830-52818998)
chr1 (131-191)||(11882145-11882205)
chr1 (110-186)||(11882342-11882418)
chr1 (110-186)||(11882438-11882514)
chr1 (131-191)||(11891379-11891439)
chr1 (110-186)||(11891576-11891652)
chr1 (110-186)||(11891672-11891748)
chr1 (107-186)||(11891864-11891943)
chr1 (23-90)||(52821137-52821204)
chr1 (47-189)||(11905520-11905662)
chr1 (161-191)||(52821227-52821257)
chr1 (110-191)||(11904990-11905071)
chr1 (136-180)||(11879730-11879774)
chr1 (29-145)||(11888186-11888302)
chr1 (41-189)||(11891909-11892057)
chr1 (77-189)||(52818500-52818612)
[»] scaffold1918 (4 HSPs)
scaffold1918 (107-189)||(34-116)
scaffold1918 (26-95)||(1-70)
scaffold1918 (122-191)||(1-70)
scaffold1918 (109-177)||(183-251)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 78)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 11880458 - 11880267
Alignment:
Q  1 gtggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  11880458 gtggggaataggagacggagggggaggagatttgtagtaatatggtggtggaggagacggtgaaggtggtgggggagatgtgtaatagtaaggtgtatgg 11880359  T
Q  101 ggaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtgt 192  Q
    ||||| ||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11880358 ggaatgggagatggatgaggaggggatttgtagtagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgt 11880267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 11902958 - 11902767
Alignment:
Q  1 gtggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  11902958 gtggggaataggagacggagggggaggagatttgtagtaatatggtggtggaggagacggtgaaggtggtgggggagatgtgtaatagtaaggtgtatgg 11902859  T
Q  101 ggaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtgt 192  Q
    ||||| ||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11902858 ggaatgggagatggatgaggaggggatttgtagtagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgt 11902767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 11902764 - 11902576
Alignment:
Q  3 ggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatgggg 102  Q
    ||||||||||||| ||||| |||||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11902764 ggggaataggagatggaggaggaggagatttgtaatagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtatgggg 11902665  T
Q  103 aataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11902664 aataggagatggaggaggaggagatttgtaatagtatggtggtggaggagatggtgaaggtggtggaggagacttgtaatagtaaggtg 11902576  T

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Target: chr1; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 11880264 - 11880076
Alignment:
Q  3 ggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatgggg 102  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11880264 ggggaataggagatggaggaggaggagatttgtagtagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtatgggg 11880165  T
Q  103 aataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  11880164 aataggagatggaggaggaggagatttgtagtagtatggtggtggaggagatggtgaaggtgggggaggagacttgtaatagtaaggtg 11880076  T

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Target: chr1; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 11902861 - 11902671
Alignment:
Q  2 tggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggg 101  Q
    |||||||| ||||| ||| | ||||| ||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||    
T  11902861 tggggaatgggagatggatgaggaggggatttgtagtagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtacggg 11902762  T
Q  102 gaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtgt 192  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11902761 gaataggagatggaggaggaggagatttgtaatagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgt 11902671  T

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Target: chr1; HSP #6
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 11880361 - 11880171
Alignment:
Q  2 tggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggg 101  Q
    |||||||| ||||| ||| | ||||| ||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||    
T  11880361 tggggaatgggagatggatgaggaggggatttgtagtagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtacggg 11880262  T
Q  102 gaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtgt 192  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11880261 gaataggagatggaggaggaggagatttgtagtagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgt 11880171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 11880001 - 11879836
Alignment:
Q  26 ggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggag 125  Q
    |||||||||||||| ||||||||||||| ||| |||||||| || |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  11880001 ggagatttgtagtagtatggtggtggaggagatggtgaagggggtgggggagatttgtagtagtaaggtgttttgggaataggagatggaggaggaggag 11879902  T
Q  126 atttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||    
T  11879901 atttgtagtagtatggtggtggaggagacggtgaagggggtgggggagatttgtagtagtatggtg 11879836  T

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Target: chr1; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 11880475 - 11880363
Alignment:
Q  80 ttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgt 179  Q
    ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||  |||    
T  11880475 ttgtagtagtaaggtgtgtggggaataggagacggagggggaggagatttgtagtaatatggtggtggaggagacggtgaaggtggtgggggagatgtgt 11880376  T
Q  180 aatagtaaggtgt 192  Q
    |||||||||||||    
T  11880375 aatagtaaggtgt 11880363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 11902975 - 11902863
Alignment:
Q  80 ttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgt 179  Q
    ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||  |||    
T  11902975 ttgtagtagtaaggtgtgtggggaataggagacggagggggaggagatttgtagtaatatggtggtggaggagacggtgaaggtggtgggggagatgtgt 11902876  T
Q  180 aatagtaaggtgt 192  Q
    |||||||||||||    
T  11902875 aatagtaaggtgt 11902863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 11880169 - 11879980
Alignment:
Q  2 tggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggg 101  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| || ||||| ||||||||||||||||   | |    
T  11880169 tggggaataggagatggaggaggaggagatttgtagtagtatggtggtggaggagatggtgaaggtgggggaggagacttgtaatagtaaggtggtggtg 11880070  T
Q  102 gaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||   || || || || || |||||||| || || ||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||    
T  11880069 gagagggtgacggtggtgggggagatttatagtagtatggtggtggaggagacggtgaagggggtgggggagatttgtagtagtatggtg 11879980  T

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Target: chr1; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 11902669 - 11902480
Alignment:
Q  2 tggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggg 101  Q
    |||||||||||||| ||||| |||||||||||||| || ||||||||||||| ||| ||||||||||| || ||||| ||||||||||||||||   | |    
T  11902669 tggggaataggagatggaggaggaggagatttgtaatagtatggtggtggaggagatggtgaaggtggtggaggagacttgtaatagtaaggtgggggtg 11902570  T
Q  102 gaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||   || || || || || |||||||| || || |||||||||||||||||||||||||| ||||| || |||||||||||||| ||||    
T  11902569 gagagggtgagggtggtgggggagatttatagtagtatggtggtggaggagatggtgaagggggtggtggggacttgtaatagtatggtg 11902480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 11889931 - 11889820
Alignment:
Q  80 ttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgt 179  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| |||||||||||||| || |||||||    
T  11889931 ttgtagtagtaaggtgtatggggaataggtgatggaggaggaggtgatttgtagtagtatggtgggggtggagacggtgaaggtggtggtggggacttgt 11889832  T
Q  180 aatagtaaggtg 191  Q
    ||||||| ||||    
T  11889831 aatagtatggtg 11889820  T

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Target: chr1; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 11879927 - 11879836
Alignment:
Q  4 gggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtg 95  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||| ||||| ||||    
T  11879927 gggaataggagatggaggaggaggagatttgtagtagtatggtggtggaggagacggtgaagggggtgggggagatttgtagtagtatggtg 11879836  T

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Target: chr1; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 52820906 - 52821009
Alignment:
Q  80 ttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgt 179  Q
    ||||| |||||||||| ||| || |  |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || |    
T  52820906 ttgtagtagtaaggtggatgaggtaccggagatggaggaggaggagacttgtaataatagggtggtggaggagatggtgaaggtggtggaggagatttat 52821005  T
Q  180 aata 183  Q
    ||||    
T  52821006 aata 52821009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 11880103 - 11879931
Alignment:
Q  20 gggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggag 119  Q
    ||||||||||| ||||| || || |||||||| | ||| ||||| ||||| ||||||||||| || ||||| ||||   | |||   || || || || |    
T  11880103 gggggaggagacttgtaatagtaaggtggtggtggagagggtgacggtggtgggggagatttatagtagtatggtggtggaggagacggtgaagggggtg 11880004  T
Q  120 gaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtgt 192  Q
    | ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  11880003 ggggagatttgtagtagtatggtggtggaggagatggtgaagggggtgggggagatttgtagtagtaaggtgt 11879931  T

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Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 52820933 - 52821111
Alignment:
Q  11 ggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggag 110  Q
    ||||| ||||| |||||||| ||||| ||||| |||||||||| ||| ||||||||||| || |||||||| ||||| || ||||   | ||    || |    
T  52820933 ggagatggaggaggaggagacttgtaataatagggtggtggaggagatggtgaaggtggtggaggagatttataataatatggtggtggaggggacggtg 52821032  T
Q  111 atggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaagg 189  Q
    | ||||| || || || |||||||||||||| || ||||| || ||||| |||||||||||||||||||| ||||||||    
T  52821033 aaggaggtggtggggacttgtaataatatggaggaggaggggagggtgagggtggtgggggagacttgtagtagtaagg 52821111  T

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Target: chr1; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 11879857 - 11879788
Alignment:
Q  122 ggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  11879857 ggagatttgtagtagtatggtggtggaggagatggtgaaggtggtggtggggacttgtaatagtatggtg 11879788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889646 - 11889484
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||| ||||| || |||||||| | ||| |||||||||||||| || |||||||||||||||||||   | |||  ||| ||||| ||||| || ||||    
T  11889646 gatttatagtagtagggtggtgggggagatggtgaaggtggcggtggggatttgtaatagtaaggtgggggaggagaaggcgatggtggaggtggggatt 11889547  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889546 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 11889835 - 11889777
Alignment:
Q  128 ttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  11889835 ttgtaatagtatggtggtggaggagatggtgaaggtggtggtggggacttgtaatagta 11889777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 11905026 - 11904942
Alignment:
Q  107 ggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||||||| ||||| || || |||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||    
T  11905026 ggagatggtggaggtggtgacttgtaatagtatggtggtggtggagatggtgatggtggagggggggacttgtaatagtatggtg 11904942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 11882076 - 11882006
Alignment:
Q  116 ggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||||||||||||    
T  11882076 ggaggaggagatttgtaataataaggtggaggaggggatggtgatggtggaggtggggacttgtaatagta 11882006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 11891310 - 11891240
Alignment:
Q  116 ggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||||||||||||    
T  11891310 ggaggaggagatttgtaataataaggtggaggaggggatggtgatggtggaggtggggacttgtaatagta 11891240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 11889913 - 11889820
Alignment:
Q  2 tggggaataggagacggagggggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtg 95  Q
    ||||||||||| || ||||| ||||| ||||||||||| |||||||| || | ||||||||||||||| || || || ||||||||||| ||||    
T  11889913 tggggaataggtgatggaggaggaggtgatttgtagtagtatggtgggggtggagacggtgaaggtggtggtggggacttgtaatagtatggtg 11889820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 11905263 - 11905182
Alignment:
Q  110 gatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||||| || ||||||||||||||||||||||| || ||||| |||||||| ||||| || || ||||| |||||||||||||    
T  11905263 gatggtggtggaggagatttgtaataatatggagggggaggggatggtgatggtgggggtggtgacttataatagtaaggtg 11905182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 52821227 - 52821351
Alignment:
Q  65 ggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtg 164  Q
    ||||| |||||||| |||||||||||||||| | | ||    ||||| || |||||||||||||| || || || ||||| ||||| || ||||||||||    
T  52821227 ggtggtgggggagacttgtaatagtaaggtggaggaggggagggagagggtggaggaggagatttatagtagtaaggtggaggaggtgaaggtgaaggtg 52821326  T
Q  165 gtgggggagacttgtaatagtaagg 189  Q
    |||| || |||||||| ||||||||    
T  52821327 gtggaggtgacttgtagtagtaagg 52821351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 11879707 - 11879625
Alignment:
Q  107 ggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaagg 189  Q
    |||||||| || |||||||| |||||||| ||||||||||| || || ||||| |||||||| ||||| ||||| ||||||||    
T  11879707 ggagatggtggtggaggagacttgtaatagtatggtggtggtggggaaggtgagggtggtggaggagatttgtagtagtaagg 11879625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888350 - 11888188
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888350 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888251  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888250 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888398 - 11888236
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888398 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888299  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888298 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888446 - 11888284
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888446 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888347  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888346 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888494 - 11888332
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888494 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888395  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888394 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888542 - 11888380
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888542 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888443  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888442 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888590 - 11888428
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888590 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888491  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888490 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888638 - 11888476
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888638 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888539  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888538 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888686 - 11888524
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888686 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888587  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888586 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888734 - 11888572
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888734 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888635  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888634 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888782 - 11888620
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888782 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888683  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888682 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888830 - 11888668
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888830 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888731  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888730 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888878 - 11888716
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888878 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888779  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888778 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888926 - 11888764
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888926 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888827  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888826 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11888974 - 11888812
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888974 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888875  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888874 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889022 - 11888860
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889022 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888923  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888922 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889070 - 11888908
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889070 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888971  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11888970 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889118 - 11888956
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889118 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889019  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889018 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11888956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889166 - 11889004
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889166 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889067  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889066 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889214 - 11889052
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889214 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889115  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889114 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889262 - 11889100
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889262 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889163  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889162 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889310 - 11889148
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889310 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889211  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889210 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889358 - 11889196
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889358 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889259  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889258 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889406 - 11889244
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889406 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889307  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889306 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889454 - 11889292
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889454 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889355  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889354 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 11889502 - 11889340
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11889502 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11889403  T
Q  129 tgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||| || ||||||||||||||||| || || ||||| || || || ||||| ||||| ||||    
T  11889402 tgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtg 11889340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 11889694 - 11889648
Alignment:
Q  125 gatttgtaataatatggtggtggaggagatggtgaaggtggtggggg 171  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  11889694 gatttgtagtagtatggtggtggaggagatggtgaaggtggtggggg 11889648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 11879740 - 11879671
Alignment:
Q  122 ggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||||| ||||| ||||||||||||||||| || || || |||||||| ||||||||||||||||| ||||    
T  11879740 ggagacttgtagtaatatggtggtggaggtgagggagatggtggtggaggagacttgtaatagtatggtg 11879671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 11879857 - 11879788
Alignment:
Q  26 ggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtg 95  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||| || || || ||||||||||| ||||    
T  11879857 ggagatttgtagtagtatggtggtggaggagatggtgaaggtggtggtggggacttgtaatagtatggtg 11879788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 11882466 - 11882390
Alignment:
Q  110 gatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||| || ||||||||||||||||| ||||| || ||||| |||||||| |||||||| || || |||||||||||    
T  11882466 gatggtggtggaggagatttgtaatagtatggagggggaggtgatggtgatggtggtggaggtgatttgtaatagta 11882390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 11891700 - 11891624
Alignment:
Q  110 gatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||| || ||||||||||||||||| ||||| || ||||| |||||||| |||||||| || || |||||||||||    
T  11891700 gatggtggtggaggagatttgtaatagtatggagggggaggtgatggtgatggtggtggaggtgatttgtaatagta 11891624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 11905554 - 11905475
Alignment:
Q  107 ggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||||||||| || |||||||||||||| || || ||||| || |||||||| |||||||| || || |||||||||||    
T  11905554 ggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgacggtggtggaggtgatttgtaatagta 11905475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 52821137 - 52821204
Alignment:
Q  119 ggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    |||||||| ||||| || || ||||||||||| || || |||||||| ||||||||||||||||||||    
T  52821137 ggaggagacttgtagtagtaaggtggtggaggtgagggagaaggtggagggggagacttgtaatagta 52821204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 11882757 - 11882675
Alignment:
Q  107 ggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaagg 189  Q
    ||||||||||| || |||||||||||||| || || ||||| || |||||||| || ||||| || || ||||||||||||||    
T  11882757 ggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagtaagg 11882675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 11889694 - 11889628
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtg 95  Q
    ||||||||||| ||||||||||||| ||| ||||||||||| ||||| ||||| || ||||| ||||    
T  11889694 gatttgtagtagtatggtggtggaggagatggtgaaggtggtgggggtgatttatagtagtagggtg 11889628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 11904873 - 11904803
Alignment:
Q  116 ggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||| || |||||    
T  11904873 ggaggaggagatttgtaataataaggtggaggaggggatggtgatggtgggggtggtgacttatagtagta 11904803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 11879740 - 11879575
Alignment:
Q  26 ggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggag 125  Q
    ||||| ||||||||||||||||||||||  || || || ||||| || ||||| ||||||||||| ||||   | ||   ||| || || || |||||||    
T  11879740 ggagacttgtagtaatatggtggtggaggtgagggagatggtggtggaggagacttgtaatagtatggtggtggtggggaaggtgagggtggtggaggag 11879641  T
Q  126 atttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||||||| || || || |||||||| || || ||||||||||| |||  |||||| ||||| ||||    
T  11879640 atttgtagtagtaaggaggtggaggtgaaggagaaggtggtggaggactcttgtagtagtatggtg 11879575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 52818830 - 52818998
Alignment:
Q  23 ggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatg-gggaataggagatggaggagga 121  Q
    ||||| |||||||||||||| || ||||| | ||| ||||| ||||| || || |||| ||||||||| |||| | | ||| || || || || || |||    
T  52818830 ggaggtgatttgtagtaataaggaggtggtggagatggtgatggtggtggaggggattggtaatagtacggtggaggtggggat-ggtgagggtggtgga 52818928  T
Q  122 ggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||||||| ||||| ||||| || ||||| |||||||| ||||| || || ||||| |||||||| ||||    
T  52818929 ggagatttataatagtatggagggggaggggatggtgatggtggaggtggtgacttataatagtatggtg 52818998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #64
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 11882205 - 11882145
Alignment:
Q  131 taataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||||||| |||||||| ||||||||||| ||||| || |||||||| |||||||| ||||    
T  11882205 taataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtg 11882145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #65
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 11882418 - 11882342
Alignment:
Q  110 gatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||| || ||||| ||||||||||| || || ||||| || |||||||| |||||||| ||||| |||||||||||    
T  11882418 gatggtggtggaggtgatttgtaatagtagggaggtggtggtgatggtgatggtggtggaggagatttgtaatagta 11882342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #66
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 11882514 - 11882438
Alignment:
Q  110 gatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||| || ||||| ||||||||||| || || ||||| || |||||||| |||||||| ||||| |||||||||||    
T  11882514 gatggtggtggaggtgatttgtaatagtaaggaggtggtggtgatggtgatggtggtggaggagatttgtaatagta 11882438  T

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Target: chr1; HSP #67
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 11891439 - 11891379
Alignment:
Q  131 taataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||||||| |||||||| ||||||||||| ||||| || |||||||| |||||||| ||||    
T  11891439 taataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtg 11891379  T

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Target: chr1; HSP #68
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 11891652 - 11891576
Alignment:
Q  110 gatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||| || ||||| ||||||||||| || || ||||| || |||||||| |||||||| ||||| |||||||||||    
T  11891652 gatggtggtggaggtgatttgtaatagtagggaggtggtggtgatggtgatggtggtggaggagatttgtaatagta 11891576  T

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Target: chr1; HSP #69
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 11891748 - 11891672
Alignment:
Q  110 gatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||| || ||||| ||||||||||| || || ||||| || |||||||| |||||||| ||||| |||||||||||    
T  11891748 gatggtggtggaggtgatttgtaatagtaaggaggtggtggtgatggtgatggtggtggaggagatttgtaatagta 11891672  T

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Target: chr1; HSP #70
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 11891943 - 11891864
Alignment:
Q  107 ggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagta 186  Q
    ||||||||||| || |||||||||||||| || || ||||| || |||||||| || ||||| || || |||||||||||    
T  11891943 ggagatggaggtgggggagatttgtaatagtaaggaggtggcggtgatggtgagggaggtggaggtgatttgtaatagta 11891864  T

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Target: chr1; HSP #71
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 52821137 - 52821204
Alignment:
Q  23 ggaggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagta 90  Q
    |||||||| |||||||| || ||||||||||  || || |||||||| |||||||| |||||||||||    
T  52821137 ggaggagacttgtagtagtaaggtggtggaggtgagggagaaggtggagggggagacttgtaatagta 52821204  T

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Target: chr1; HSP #72
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 11905662 - 11905520
Alignment:
Q  47 ggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaataatatggtggtg 146  Q
    ||||||| ||| || || ||||| || || |||||||| ||||| || | ||| | ||| |||||||| |||||||||  ||  || | ||| || ||||    
T  11905662 ggtggaggagatggagacggtggtggaggggatttgtagtagtagggaggatgagaaatgggagatggtggaggaggactttgatagtgataaggaggtg 11905563  T
Q  147 gaggagatggtgaaggtggtgggggagacttgtaatagtaagg 189  Q
    | |||||||| || || ||||||||||| ||||||||||||||    
T  11905562 gtggagatggagatggaggtgggggagatttgtaatagtaagg 11905520  T

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Target: chr1; HSP #73
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 52821227 - 52821257
Alignment:
Q  161 ggtggtgggggagacttgtaatagtaaggtg 191  Q
    |||||||||||||||||||||||||||||||    
T  52821227 ggtggtgggggagacttgtaatagtaaggtg 52821257  T

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Target: chr1; HSP #74
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 11905071 - 11904990
Alignment:
Q  110 gatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||||| ||||| || || || ||||| |||||||| ||||||||||| || ||||| || || |||||||||||||| ||||    
T  11905071 gatggtggaggtggtgacttataatagtatggtggaggaggagatggagatggtggaggtggtgacttgtaatagtatggtg 11904990  T

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Target: chr1; HSP #75
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 11879774 - 11879730
Alignment:
Q  136 atatggtggtggaggagatggtgaaggtggtgggggagacttgta 180  Q
    |||||| |||||||| || ||||| ||||||||||||||||||||    
T  11879774 atatgggggtggaggggagggtgagggtggtgggggagacttgta 11879730  T

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Target: chr1; HSP #76
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 11888302 - 11888186
Alignment:
Q  29 gatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatt 128  Q
    ||||||||||| ||||||||||||| ||| || || ||||| || || |||||||| ||||| ||||   | |||  ||| ||||| ||||| || ||||    
T  11888302 gatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatttgtagtagtatggtggtggaggagaaggcgatggtggaggtggggatt 11888203  T
Q  129 tgtaataatatggtggt 145  Q
    |||| || |||||||||    
T  11888202 tgtagtagtatggtggt 11888186  T

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Target: chr1; HSP #77
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 11892057 - 11891909
Alignment:
Q  41 tatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaataatatg 140  Q
    ||||| ||||||| ||| || || ||||| || || |||||||| ||||  || | ||| | ||| |||||||| |||||||||  ||  || | ||| |    
T  11892057 tatggaggtggaggagatggcgatggtggtggaggggatttgtagtagttgggaggatgagaaatgggagatgggggaggaggactttgatagtgataag 11891958  T
Q  141 gtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaagg 189  Q
    | ||||| |||||||| || || ||||||||||| ||||||||||||||    
T  11891957 gaggtggtggagatggagatggaggtgggggagatttgtaatagtaagg 11891909  T

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Target: chr1; HSP #78
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 52818500 - 52818612
Alignment:
Q  77 gatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagact 176  Q
    |||||||| | ||| || ||||| ||| | |||||||| |||||||||  ||  || ||||| || ||||| |||||||| || || ||||| || ||||    
T  52818500 gatttgtagtggtagggagtatgaggagtgggagatggtggaggaggactttgatagtaataaggaggtggtggagatggagatggaggtggaggtgact 52818599  T
Q  177 tgtaatagtaagg 189  Q
    |||||||||||||    
T  52818600 tgtaatagtaagg 52818612  T

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Target: scaffold1918 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 34 - 116
Alignment:
Q  107 ggagatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaagg 189  Q
    |||||||| || || |||||||||||||| || ||||||||||| ||  |||| || |||||||| || |||||||| |||||    
T  34 ggagatggtggtggtggagatttgtaatagtaaggtggtggaggggaatgtgaggggggtgggggggatttgtaataataagg 116  T

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Target: scaffold1918; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 1 - 70
Alignment:
Q  26 ggagatttgtagtaatatggtggtggagcagacggtgaaggtggcgggggagatttgtaatagtaaggtg 95  Q
    ||||| |||||||| ||||| |||||||  || || || ||||| || ||||||||||||||||||||||    
T  1 ggagacttgtagtagtatggaggtggaggtgagggagatggtggtggtggagatttgtaatagtaaggtg 70  T

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Target: scaffold1918; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 1 - 70
Alignment:
Q  122 ggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagacttgtaatagtaaggtg 191  Q
    ||||| ||||| || ||||| |||||||| || || || |||||||| ||||| ||||||||||||||||    
T  1 ggagacttgtagtagtatggaggtggaggtgagggagatggtggtggtggagatttgtaatagtaaggtg 70  T

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Target: scaffold1918; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 183 - 251
Alignment:
Q  109 agatggaggaggaggagatttgtaataatatggtggtggaggagatggtgaaggtggtgggggagactt 177  Q
    |||||| || ||||| ||||| || | ||| |||||||| || ||||||||||| ||||||||||||||    
T  183 agatggtggtggaggtgatttatactcatagggtggtgggggtgatggtgaaggaggtgggggagactt 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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