View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_4 (Length: 527)
Name: NF16799_low_4
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 24 - 522
Target Start/End: Original strand, 35783273 - 35783770
Alignment:
| Q |
24 |
tcatttttatagcaatatcatggccactttctctcattgctttacgtctttcaaccgttttgattgtataaactgaaattagacggttctgtgatcttat |
123 |
Q |
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| T |
35783273 |
tcatttttatagcaatatcatggtcactttctctcattgctttacgtctttcaaccgttttgattgtataaactgaaattagacggtt-tgcgatcttat |
35783371 |
T |
|
| Q |
124 |
cccccaggtggagaatctaatactcgaagttctttatgcaaatctcattgcttgcaaatccgagcgtgttactgtaagtctatgttaagatatataaata |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35783372 |
cccccaggtggagaatctaatactcgaagttctttatgcaaatctcattgcttgcaaatccgagcgtgttactgtaagtctatgttaagatatataaata |
35783471 |
T |
|
| Q |
224 |
tgtaccatgattcagactgcattctttttatggcttgtgaaacttaaatattatcaggcaatgagatgatctaatgatactttattacatatttttgtat |
323 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35783472 |
tgtaccatgattaagactgcattctttttatggcttgtgaaacttaaatattatcaggcaatgagatgatctaatgatacttaattacatatttttgtat |
35783571 |
T |
|
| Q |
324 |
taattacatgctgcaggagattagtataggaattattgggaaccttgcttgccatgaagttccactgaatcaaatagtgtcgacaaaaggactgattgag |
423 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
35783572 |
taattacatgctacaggagattagtataggaattattgggaaccttgcttgccatgaagttccattgaatcaaatagtctcgacaaaaggactgattgag |
35783671 |
T |
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| Q |
424 |
ataattgtggaaaaattgtttctagatgatcctcaatgcctatgtgaaacatgtcggtatgatacttttttgacacatgtaaatgtagttcttctctct |
522 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35783672 |
ataattgtggaaaaattgtttctagatgatcctcaatgcctatgtgaaacatgtcggtatgatacttttttgacacatgtaaatgtacttcttctctct |
35783770 |
T |
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