View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_5 (Length: 452)
Name: NF16799_low_5
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 49642961 - 49642552
Alignment:
| Q |
1 |
gtaaggaagataaacggcgttagcggttttaggatcttccgttaagcatggatattctaacatacgacgatggaaaatgagttcaagcatggatgggtcg |
100 |
Q |
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| T |
49642961 |
gtaaggaagataaacggcgttagcggttttaggatcttccgttaagcatggatattctaacatacgacgatggaaaatgagttcaagcatggatgggtcg |
49642862 |
T |
|
| Q |
101 |
gttcggtaccaactatgggaacggttatgggttttttgacccaaaccatggtttgctaagtaaggacataaatcgtctaggaatgtgtattctgaacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49642861 |
gttcggtaccaactatgggaacggttatgggttttttgacccaaaccatggtttgctaagtaaggacataaatcgtctaggaatgtgtattctgaacaat |
49642762 |
T |
|
| Q |
201 |
ttgagagtagatctaggttgaattttggtggtaattttcttatgtggatccaacgttgttcgcactcattttctgttgttgttgatttaaggtttttatt |
300 |
Q |
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| T |
49642761 |
ttgagagtagatctaggttgaattttggtggtaattttcttatgtggatccaacgttgttcgcactcattttctgttgttgttgatttaaggtttttatt |
49642662 |
T |
|
| Q |
301 |
ttcttcggatttggttggattcaagaggaggaggaagatagtgatgatggag------------atgtgtggttttgatggtgccatcggaataggatgt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49642661 |
ttcttcggatttggttggattcaagaggaggaggaagatagtgatgatggagatgtagatggagatgtgtggttttgatggtgccatcggaataggatgt |
49642562 |
T |
|
| Q |
389 |
gatgaatgat |
398 |
Q |
| |
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|||||||||| |
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| T |
49642561 |
gatgaatgat |
49642552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 6623170 - 6623275
Alignment:
| Q |
32 |
ggatcttccgttaagcatgg--atattct-aacatacgacgatggaaaatgagttcaagcatggatgggtcggttcggtaccaactatgggaacggttat |
128 |
Q |
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||||||| ||||||||||| ||||||| |||||||| ||| ||| ||||||||||||||| |||||||| || || ||||||||||||| ||||| |
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| T |
6623170 |
ggatcttttgttaagcatggggatattcttaacatacggggattgaatatgagttcaagcatgtatgggtcgatt-tgtgtcaactatgggaactgttat |
6623268 |
T |
|
| Q |
129 |
gggtttt |
135 |
Q |
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||||||| |
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| T |
6623269 |
gggtttt |
6623275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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