View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_7 (Length: 422)
Name: NF16799_low_7
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 29091061 - 29091417
Alignment:
| Q |
19 |
atttccttatttgtacattttcatttttctcatgaaatattagtaaaggcaaagaattgcttctaagttaggctatccacaataaaagaaatactaaacc |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29091061 |
atttctttatttgtacattttcatttttctcatgaaata---gtaaaggcaaagaattgcttctaagttaggctatccacaataaaagaaatactaaacc |
29091157 |
T |
|
| Q |
119 |
cataaagttcattttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaactcataattcatcaaaacacaaaactac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
29091158 |
cataaagttcattttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaactcataattcatcataagacaaaactac |
29091257 |
T |
|
| Q |
219 |
tctatattacaaatatgagatacattatatatgcattatttctacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaata |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29091258 |
tctatattacaaatatgagaaacattatatatgcattatttctacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaata |
29091357 |
T |
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| Q |
319 |
acaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttca |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29091358 |
acaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttca |
29091417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 29083738 - 29084095
Alignment:
| Q |
19 |
atttccttatttgtacattttcatttttctcatgaaatattagtaaaggcaaagaattgcttctaagttaggctatccacaataaaagaaatactaaacc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
29083738 |
atttccttatttgtacattttcatttttctcatgaaata---gcaaaggcaaagaattgcttctaagttaggctatccacaatataagaaatacttaacc |
29083834 |
T |
|
| Q |
119 |
cataaagttcatt-ttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaactcataattcatcaaaacacaaaacta |
217 |
Q |
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||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || || || |
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| T |
29083835 |
cataaagtttaatcttgcggctaagaatttcatcaaagtaaagtaacgttttggttttttaataccaaagaaactcataattcatcattgctcacaaata |
29083934 |
T |
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| Q |
218 |
ctctatattacaaatatgagatacattatatatgcattatttctacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaat |
317 |
Q |
| |
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| T |
29083935 |
gtttatattacaaatatgagaagcattatatatccattatttctacatcaccatttatcaatattttctatttcttccccaaaggacacaaccataaaat |
29084034 |
T |
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| Q |
318 |
aacaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttca |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29084035 |
aacaaacaactataatcattcataatgccaagagttgtaccttggaaactcctaagtttca |
29084095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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