View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16799_low_9 (Length: 390)
Name: NF16799_low_9
Description: NF16799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16799_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 13631365 - 13631742
Alignment:
| Q |
1 |
ttgcaaaaaataaagtacacaaataacttta----gtaggagaaaattaaactagttatgtgtgtggatttctcctttatttgtactttataaagtacat |
96 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13631365 |
ttgcaaaaaataaagtacacaaataactttaattagtaggagaaaattaaactagttatgtgtgtggatttctcctttatttgtactttataaagtacat |
13631464 |
T |
|
| Q |
97 |
aaataatttgggagataaagtatgcaagcataaacatatat--gactgattgaaaaataattgactcnnnnnnnnnnnnnnnnnnnnnnatatagttgcg |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
13631465 |
aaataatttgggagataaagtatgcaagcataaacatatatatgactgattgaaaaataattgactcatttttttttatttgatttt--atatagttgcg |
13631562 |
T |
|
| Q |
195 |
ggatattcattgaatgtgttattggagccattacttatttttaaattgaaaatgggaataaaaggagcagcaattgcacatgttatctctcagtaagtcc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13631563 |
ggatattcattgaatgtgttattggagccattacttatttttaaattgaaaatgggcataaaaggagcagcaattgcacatgttatctctcagtaagtcc |
13631662 |
T |
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| Q |
295 |
taaatttgttggtaaatcttaacaagaactattaaccatgacatatattcttatatacaagtgtatcttacagaattttg |
374 |
Q |
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| T |
13631663 |
taaatttgttggtaaatcttaacaagaactattaaccatgacatatattcttatatacaagtgtatcttacagaattttg |
13631742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 13731777 - 13732154
Alignment:
| Q |
1 |
ttgcaaaaaataaagtacacaaataacttta----gtaggagaaaattaaactagttatgtgtgtggatttctcctttatttgtactttataaagtacat |
96 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13731777 |
ttgcaaaaaataaagtacacaaataactttaattagtaggagaaaattaaactagttatgtgtgtggatttctcctttatttgtactttataaagtacat |
13731876 |
T |
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| Q |
97 |
aaataatttgggagataaagtatgcaagcataaacatatat--gactgattgaaaaataattgactcnnnnnnnnnnnnnnnnnnnnnnatatagttgcg |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
13731877 |
aaataatttgggagataaagtatgcaagcataaacatatatatgactgattgaaaaataattgactcatttttttttatttgatttt--atatagttgcg |
13731974 |
T |
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| Q |
195 |
ggatattcattgaatgtgttattggagccattacttatttttaaattgaaaatgggaataaaaggagcagcaattgcacatgttatctctcagtaagtcc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13731975 |
ggatattcattgaatgtgttattggagccattacttatttttaaattgaaaatgggcataaaaggagcagcaattgcacatgttatctctcagtaagtcc |
13732074 |
T |
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| Q |
295 |
taaatttgttggtaaatcttaacaagaactattaaccatgacatatattcttatatacaagtgtatcttacagaattttg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13732075 |
taaatttgttggtaaatcttaacaagaactattaaccatgacatatattcttatatacaagtgtatcttacagaattttg |
13732154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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