View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16800_high_6 (Length: 247)
Name: NF16800_high_6
Description: NF16800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16800_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39740775 - 39740543
Alignment:
| Q |
1 |
tgaatccaagttataataagtgatatatgcaatatccatatacaaatacattactcatagtcatacaacgaaagttaagagagttaatgttgtaaattaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
39740775 |
tgaatccaagttataataggtgatatatgcaatatccatatacaaatacattactcata------caacgaaagtta-gagagttaatgttgtaaattaa |
39740683 |
T |
|
| Q |
101 |
gtaatacaatgaa--actcattaagaaagagaaagaaaaacgaccgaataaaccactcttgaaaacatgtactactagcacnnnnnnnnaaggtatatac |
198 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39740682 |
gtaatacaatgaattactcattaagaaatagaaagaaaaacgaccgaataaaccactcttgaaaacatgtactactagcacttttttttaaggtatatac |
39740583 |
T |
|
| Q |
199 |
tagtgcttaggtcatgtgaattttgcaatttatgtatttt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39740582 |
tagtgcttaggtcatgtgaattttgcaatttatgtatttt |
39740543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University