View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16800_low_2 (Length: 865)
Name: NF16800_low_2
Description: NF16800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16800_low_2 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
| [»] scaffold0136 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 264 - 850
Target Start/End: Complemental strand, 34579539 - 34578953
Alignment:
| Q |
264 |
tgagccacgttggcaatcctcaacatcacaaaacaaccaataagatacaagcacatggattacaattaatatttctaattaaaaaa-taatcataaccgt |
362 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34579539 |
tgagccacgttggcaatcctcaacaccacaaaacaaccaacaagagacaagcacatggatcacaattaatatttctaattaaaaaaataatcataaccgt |
34579440 |
T |
|
| Q |
363 |
tgaagcatgcaacgtccaagatcactctaatctcaattaaaccgacctaatcctattttttccactcctatataaacacttcctttcatacacaatattc |
462 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34579439 |
tgaagcaagcaacgtccaagatctctctaatctcaattaaaccgacctaatcctattttctccactcctatataaacacttcctttcatacacaatcttc |
34579340 |
T |
|
| Q |
463 |
attcctttcttctttcaatatagtcttcttcnnnnnnncgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaagga |
562 |
Q |
| |
|
| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34579339 |
aatcctttcttctttcaaaatagtcttcttctttttt-cgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaagga |
34579241 |
T |
|
| Q |
563 |
agcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagat |
662 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34579240 |
agcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagat |
34579141 |
T |
|
| Q |
663 |
acgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattc |
762 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34579140 |
acgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattc |
34579041 |
T |
|
| Q |
763 |
cagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34579040 |
cagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
34578953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 264 - 850
Target Start/End: Complemental strand, 34585288 - 34584702
Alignment:
| Q |
264 |
tgagccacgttggcaatcctcaacatcacaaaacaaccaataagatacaagcacatggattacaattaatatttctaattaaaaaa-taatcataaccgt |
362 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34585288 |
tgagccacgttggcaatcctcaacaccacaaaacaaccaacaagagacaagcacatggatcacaattaatatttctaattaaaaaaataatcataaccgt |
34585189 |
T |
|
| Q |
363 |
tgaagcatgcaacgtccaagatcactctaatctcaattaaaccgacctaatcctattttttccactcctatataaacacttcctttcatacacaatattc |
462 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34585188 |
tgaagcaagcaacgtccaagatctctctaatctcaattaaaccgacctaatcctattttctccactcctatataaacacttcctttcatacacaatcttc |
34585089 |
T |
|
| Q |
463 |
attcctttcttctttcaatatagtcttcttcnnnnnnncgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaagga |
562 |
Q |
| |
|
| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34585088 |
aatcctttcttctttcaaaatagtcttcttctttttt-cgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaagga |
34584990 |
T |
|
| Q |
563 |
agcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagat |
662 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584989 |
agcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagat |
34584890 |
T |
|
| Q |
663 |
acgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattc |
762 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584889 |
acgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattc |
34584790 |
T |
|
| Q |
763 |
cagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584789 |
cagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
34584702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 614 - 850
Target Start/End: Complemental strand, 34571721 - 34571485
Alignment:
| Q |
614 |
tcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattcca |
713 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34571721 |
tcaagaagcctcatcgttttcgttgcggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattcca |
34571622 |
T |
|
| Q |
714 |
gcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggtt |
813 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
34571621 |
gcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggtt |
34571522 |
T |
|
| Q |
814 |
ggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34571521 |
ggtttgtttgaggataccaatttgtgtgcaattcatg |
34571485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 502 - 850
Target Start/End: Complemental strand, 34563039 - 34562691
Alignment:
| Q |
502 |
gattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaa |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||| |||||||||||| |||||| || | | |||| |
|
|
| T |
34563039 |
gattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgtaattataaaccaa |
34562940 |
T |
|
| Q |
602 |
caaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaa |
701 |
Q |
| |
|
|| ||| | |||| |||| ||||| |||||||||||||||||||||||| ||||||||||| || |||||| || |||| |||||||||||||| |
|
|
| T |
34562939 |
ag---ggaggacttaagagacctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaa |
34562843 |
T |
|
| Q |
702 |
acttccattccagcgtcttgttcgtgaaattgctcaga---atttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtg |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||| |||||||||||||||||||||| | |
|
|
| T |
34562842 |
gcttccattccagcgtcttgttcgtgaaattgctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcg |
34562743 |
T |
|
| Q |
799 |
gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34562742 |
gaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
34562691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 34579812 - 34579618
Alignment:
| Q |
8 |
aaaaaatatgctaagaataacagactgtcatcaaggtaatatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagt |
107 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||||| ||||| |||||||| |||| |||||||||||| |
|
|
| T |
34579812 |
aaaaaatatgctaagaataacgtacaatcatcaaggtaatatttaattactaaaggatgaagttttgtttcaagcatctcatagagaggggggtataagt |
34579713 |
T |
|
| Q |
108 |
tttacttttcaaaataggcggtgtatattttaacataaagaggagaagaatattatgtaatttaagatatcttttaaaggagggaattgtaatttaccg |
206 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34579712 |
tttacttttcaaaataagtagtgtatattttaacataa--aagaggagaata--atgtaatttaagatatcttttaaaggaaggaattgtaatttaccg |
34579618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 34585561 - 34585367
Alignment:
| Q |
8 |
aaaaaatatgctaagaataacagactgtcatcaaggtaatatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagt |
107 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||||| ||||| |||||||| |||| |||||||||||| |
|
|
| T |
34585561 |
aaaaaatatgctaagaataacgtacaatcatcaaggtaatatttaattactaaaggatgaagttttgtttcaagcatctcatagagaggggggtataagt |
34585462 |
T |
|
| Q |
108 |
tttacttttcaaaataggcggtgtatattttaacataaagaggagaagaatattatgtaatttaagatatcttttaaaggagggaattgtaatttaccg |
206 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34585461 |
tttacttttcaaaataagtagtgtatattttaacataa--aagaggagaata--atgtaatttaagatatcttttaaaggaaggaattgtaatttaccg |
34585367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 501 - 587
Target Start/End: Complemental strand, 34571864 - 34571778
Alignment:
| Q |
501 |
cgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcg |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
34571864 |
cgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaaggaactcgccacaaaggttgctcg |
34571778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 34590150 - 34590048
Alignment:
| Q |
266 |
agccacgttggcaatcctcaacatcacaaaacaaccaataagatacaagcacatggattacaattaatatttctaattaaaaaataatcataaccgttga |
365 |
Q |
| |
|
|||||| |||||||||||| | | |||||||||||||||| || |||||||| | ||| | |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
34590150 |
agccacattggcaatcctcgaaaccacaaaacaaccaataggaaacaagcacgtagatcagaattaatatttctaattaaaaaatcatcaccaccgttga |
34590051 |
T |
|
| Q |
366 |
agc |
368 |
Q |
| |
|
||| |
|
|
| T |
34590050 |
agc |
34590048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 850
Target Start/End: Original strand, 13576094 - 13576437
Alignment:
| Q |
507 |
aatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaacc |
606 |
Q |
| |
|
|||||| ||||| || ||||| || |||| ||||||| || || |||||| | || |||||||||||||| || ||||| ||||| | || | ||| |
|
|
| T |
13576094 |
aatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggccacc |
13576193 |
T |
|
| Q |
607 |
ggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttc |
706 |
Q |
| |
|
|| ||| | |||||||| ||||||| ||||||||||| || ||||||||||| || || |||||||||||| | ||||| ||| | || | || |||| |
|
|
| T |
13576194 |
ggaggagtgaagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttc |
13576293 |
T |
|
| Q |
707 |
cattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagctta |
806 |
Q |
| |
|
||||||| | | ||||| |||||||||||| ||||||| || ||| | | || || ||| ||| ||| || ||||| ||||| | |||||||| |
|
|
| T |
13576294 |
cattccaaagattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagctta |
13576393 |
T |
|
| Q |
807 |
tttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
| | |||||||||||||||||||| ||| | ||||| ||||||| |
|
|
| T |
13576394 |
tcttgttggtttgtttgaggatacgaatctttgtgctattcatg |
13576437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 15007018 - 15007088
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg--gtataagttttactt |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || | ||||||| |||||| |||||||| |
|
|
| T |
15007018 |
atatttaattattaagggatgaagttgtaattcaaacatcttatagggaagggggagtataaattttactt |
15007088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 37009582 - 37009683
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacat |
143 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||| || || || ||| || ||| ||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
37009582 |
atatttaattattaagggaagaggttgtaattcaaacatcttataggggaggggagtgtaaattttacttttcaagggaggggagtgtatattttaacat |
37009681 |
T |
|
| Q |
144 |
aa |
145 |
Q |
| |
|
|| |
|
|
| T |
37009682 |
aa |
37009683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 40020250 - 40020176
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaa |
119 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||||||||| | ||||||| |||||| ||||| ||||||| |
|
|
| T |
40020250 |
atatttaattattaagggagggagttgcaattcaaacatctcaaagggaaggggagtataaattttatttttcaa |
40020176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 11564391 - 11564492
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacat |
143 |
Q |
| |
|
||||||||||||||||||| || | | |||||||| ||||| || || || | | |||||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
11564391 |
atatttaattattaagggaggaggatgtaattcaagcatcttataggggatgagagtataagttttacttttcaagggaggagagtgtatattttaacat |
11564490 |
T |
|
| Q |
144 |
aa |
145 |
Q |
| |
|
|| |
|
|
| T |
11564491 |
aa |
11564492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 33146186 - 33146085
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacat |
143 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||| ||||| || || || |||||||||| |||| |||||||| ||| | |||||||||||||||| |
|
|
| T |
33146186 |
atatttaattattaagggagggggttgtaattcaagcatcttataggggaggggggtataaattttccttttcaagggaggggagtgtatattttaacat |
33146087 |
T |
|
| Q |
144 |
aa |
145 |
Q |
| |
|
|| |
|
|
| T |
33146086 |
aa |
33146085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 503 - 850
Target Start/End: Original strand, 41943686 - 41944033
Alignment:
| Q |
503 |
attcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaac |
602 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||| ||||||||||| ||||||| || || |
|
|
| T |
41943686 |
attcaatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctac |
41943785 |
T |
|
| Q |
603 |
aaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaa |
702 |
Q |
| |
|
|||||| ||| ||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||| || |||||| |||| || |||||||||||||| |
|
|
| T |
41943786 |
aaccggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaag |
41943885 |
T |
|
| Q |
703 |
cttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaag |
802 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
41943886 |
cttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaag |
41943985 |
T |
|
| Q |
803 |
cttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41943986 |
cttatctggttggattgtttgaggataccaatttgtgtgcaattcatg |
41944033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 501 - 850
Target Start/End: Original strand, 25865440 - 25865789
Alignment:
| Q |
501 |
cgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgcca |
600 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||| || || ||||| | ||||||| ||| |
|
|
| T |
25865440 |
cgattcaatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctcca |
25865539 |
T |
|
| Q |
601 |
acaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgta |
700 |
Q |
| |
|
|| ||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
25865540 |
accaccggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgta |
25865639 |
T |
|
| Q |
701 |
aacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtgga |
800 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||| ||||| ||||| ||||| |||||||||||||| | || |
|
|
| T |
25865640 |
agcttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctga |
25865739 |
T |
|
| Q |
801 |
agcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
|||||| | || || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
25865740 |
ggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatg |
25865789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 508 - 850
Target Start/End: Original strand, 38799242 - 38799584
Alignment:
| Q |
508 |
atggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccg |
607 |
Q |
| |
|
||||| ||||| |||||||| ||||||| ||||||| || ||||| || ||||||| |||||||| ||||| ||||| ||||| | || | |||| |
|
|
| T |
38799242 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38799341 |
T |
|
| Q |
608 |
gcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttcc |
707 |
Q |
| |
|
| ||| | |||||||| ||| | | | |||||||| |||||| | | ||||| ||||||||||||||| | || || ||| | |||||||||||||| |
|
|
| T |
38799342 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38799441 |
T |
|
| Q |
708 |
attccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttat |
807 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||| ||||| ||||| | |||||||| |
|
|
| T |
38799442 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38799541 |
T |
|
| Q |
808 |
ttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
||||||||| | ||||| || || || | ||||||||||||| |
|
|
| T |
38799542 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatg |
38799584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 508 - 850
Target Start/End: Complemental strand, 38822275 - 38821933
Alignment:
| Q |
508 |
atggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccg |
607 |
Q |
| |
|
||||| ||||| |||||||| ||||||| ||||||| || ||||| || ||||||| |||||||| ||||| ||||| ||||| | || | |||| |
|
|
| T |
38822275 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38822176 |
T |
|
| Q |
608 |
gcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttcc |
707 |
Q |
| |
|
| ||| | |||||||| ||| | | | |||||||| |||||| | | ||||| ||||||||||||||| | || || ||| | |||||||||||||| |
|
|
| T |
38822175 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38822076 |
T |
|
| Q |
708 |
attccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttat |
807 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||| ||||| ||||| | |||||||| |
|
|
| T |
38822075 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38821976 |
T |
|
| Q |
808 |
ttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
||||||||| | ||||| || || || | ||||||||||||| |
|
|
| T |
38821975 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatg |
38821933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 506 - 749
Target Start/End: Original strand, 26591913 - 26592156
Alignment:
| Q |
506 |
caatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaac |
605 |
Q |
| |
|
||||||| ||||| ||||||||||| |||| |||||| || || |||||||||||||| ||||| ||||| || ||||| ||||| | || | || |
|
|
| T |
26591913 |
caatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgac |
26592012 |
T |
|
| Q |
606 |
cggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaactt |
705 |
Q |
| |
|
||||||| | |||||||| || |||| | || ||||| || || || |||||||| || ||||| |||||| | ||||||||| | || || |||||| |
|
|
| T |
26592013 |
cggcggagtgaagaagccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaactt |
26592112 |
T |
|
| Q |
706 |
ccattccagcgtcttgttcgtgaaattgctcagaatttcaagac |
749 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
26592113 |
cctttccagcgtcttgttcgtgagattgctcaggatttcaagac |
26592156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 616 - 714
Target Start/End: Original strand, 44343856 - 44343956
Alignment:
| Q |
616 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgt--gagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattcca |
713 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
44343856 |
aagaagcctcatcattatcgtcctggaaccgttgctcttcgtgagagatctgtaagtatcagaagagtaccaaacttttgatccgtaagcttcccttcca |
44343955 |
T |
|
| Q |
714 |
g |
714 |
Q |
| |
|
| |
|
|
| T |
44343956 |
g |
44343956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 507 - 713
Target Start/End: Complemental strand, 43480056 - 43479850
Alignment:
| Q |
507 |
aatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaacc |
606 |
Q |
| |
|
|||||| ||||| || ||||| ||||||| ||||||| ||| || || |||||||| ||||||||||| || || ||||| ||||| | || | ||| |
|
|
| T |
43480056 |
aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccacc |
43479957 |
T |
|
| Q |
607 |
ggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttc |
706 |
Q |
| |
|
|| ||| | |||||||| || | | ||||||||||| ||||||||||||||||| || |||||||||||| ||||||| ||| | ||| | || |||| |
|
|
| T |
43479956 |
ggaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttc |
43479857 |
T |
|
| Q |
707 |
cattcca |
713 |
Q |
| |
|
||||||| |
|
|
| T |
43479856 |
cattcca |
43479850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 783 - 850
Target Start/End: Original strand, 44343977 - 44344044
Alignment:
| Q |
783 |
acttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
|||||||||||||| || |||||| | || || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
44343977 |
acttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatg |
44344044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 40299510 - 40299550
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatct |
86 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
40299510 |
atatttaattattaagggatgaagttgtaattcaagcatct |
40299550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 34678749 - 34678678
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttactttt |
116 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||||| || ||||| ||| ||||| |||||||||| |
|
|
| T |
34678749 |
atatttaattattaagggatgacgttgtaattcaagcatcttataggagaggggattataaattttactttt |
34678678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 35366916 - 35366979
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttt |
109 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||| || ||| ||| |||||| |
|
|
| T |
35366916 |
atatttaattattaagggagtgagttgtaattcaaacatctcatggggaggggagtacaagttt |
35366979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 40791200 - 40791126
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaa |
119 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||| || | |||||| |||||| ||||||||||||| |
|
|
| T |
40791200 |
atatttaattattaagggagggggttgtaattcaaacatcttataagggaagggagtataaattttacttttcaa |
40791126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 508 - 850
Target Start/End: Original strand, 12531239 - 12531581
Alignment:
| Q |
508 |
atggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccg |
607 |
Q |
| |
|
||||| ||||| |||||||| ||||||| ||||||| || || |||||||||||||| || ||||| || ||||| || ||||||| || |||||| |
|
|
| T |
12531239 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg |
12531338 |
T |
|
| Q |
608 |
gcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttcc |
707 |
Q |
| |
|
| ||| |||||||||| || | | ||||| ||||| ||||| ||||||||||| || ||||| |||||| | ||||| ||| | || | || ||||| |
|
|
| T |
12531339 |
gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc |
12531438 |
T |
|
| Q |
708 |
attccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttat |
807 |
Q |
| |
|
||||||| | |||||||||||||| ||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| |
|
|
| T |
12531439 |
attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
12531538 |
T |
|
| Q |
808 |
ttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
| |||||||||||||| ||||| ||| | ||||| ||||||| |
|
|
| T |
12531539 |
cttgttggtttgtttgaagatactaatctctgtgccattcatg |
12531581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 508 - 850
Target Start/End: Complemental strand, 12547380 - 12547038
Alignment:
| Q |
508 |
atggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccg |
607 |
Q |
| |
|
||||| ||||| |||||||| ||||||| ||||||| || || |||||||||||||| || ||||| || ||||| || ||||||| || |||||| |
|
|
| T |
12547380 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg |
12547281 |
T |
|
| Q |
608 |
gcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttcc |
707 |
Q |
| |
|
| ||| |||||||||| || | | ||||| ||||| ||||| ||||||||||| || ||||| |||||| | ||||| ||| | || | || ||||| |
|
|
| T |
12547280 |
gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc |
12547181 |
T |
|
| Q |
708 |
attccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttat |
807 |
Q |
| |
|
||||||| | |||||||||||||| ||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| |
|
|
| T |
12547180 |
attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
12547081 |
T |
|
| Q |
808 |
ttggttggtttgtttgaggataccaatttgtgtgcaattcatg |
850 |
Q |
| |
|
| |||||||||||||| ||||| ||| | ||||| ||||||| |
|
|
| T |
12547080 |
cttgttggtttgtttgaagatactaatctctgtgccattcatg |
12547038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 31850156 - 31850055
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaatagg-cggtgtatattttaacat |
143 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||||||||| | ||||||| |||||| ||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
31850156 |
atatttaattattaagggagggagttggaattcaaacatctcaaagggaaggggagtataaattttatttttcaaaggaggaaagtgtatattttaacat |
31850057 |
T |
|
| Q |
144 |
aa |
145 |
Q |
| |
|
|| |
|
|
| T |
31850056 |
aa |
31850055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 42598474 - 42598434
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatct |
86 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
42598474 |
atatttaattattaagggaggaagttgtaattcaaacatct |
42598434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 6844434 - 6844364
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttactttt |
116 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||||||| || |||| ||||||||||| |||| ||||| |
|
|
| T |
6844434 |
atatttaattaataagggaggaagttgtaattcaaacatcttataggag-agggggtataaatttttctttt |
6844364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 6123848 - 6123882
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaa |
80 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
6123848 |
atatttaattattaagggatgaagttgtaattcaa |
6123882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 523 - 669
Target Start/End: Complemental strand, 9867024 - 9866878
Alignment:
| Q |
523 |
caaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaagc |
622 |
Q |
| |
|
||||| ||||||| ||||||| ||||| |||||| | ||| | || |||||||| |||||||| ||||| | || |||| || ||| | ||||||| |
|
|
| T |
9867024 |
caaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacgggaggagtgaagaagc |
9866925 |
T |
|
| Q |
623 |
ctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaag |
669 |
Q |
| |
|
| || |||| ||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
9866924 |
cacaccgtttccgtcctggaaccgttgcgcttcgtgagatccgtaag |
9866878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 38955483 - 38955557
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatg-gagaagggggtataagttttacttttcaa |
119 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| ||| | |||||| |||||| ||||||||||||| |
|
|
| T |
38955483 |
atatttaattattaagggagagtgttgtaattcaaacatcttatgagggaagggagtataaattttacttttcaa |
38955557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 505 - 749
Target Start/End: Original strand, 34748499 - 34748743
Alignment:
| Q |
505 |
tcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaa |
604 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||| |||||| ||||| || |||||||||||||| |||||||| || ||||| ||||||| || | | |
|
|
| T |
34748499 |
tcaatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggcca |
34748598 |
T |
|
| Q |
605 |
ccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaact |
704 |
Q |
| |
|
|||| ||| | ||||| ||||| |||| | || ||||| || ||||| |||||||| |||||||| |||||| | |||||||| | ||||| ||||| |
|
|
| T |
34748599 |
ccggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaact |
34748698 |
T |
|
| Q |
705 |
tccattccagcgtcttgttcgtgaaattgctcagaatttcaagac |
749 |
Q |
| |
|
|| ||||||||||| |||||||| || |||||| |||||||||| |
|
|
| T |
34748699 |
ccccttccagcgtctggttcgtgagatcgctcaggatttcaagac |
34748743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 504 - 746
Target Start/End: Original strand, 24860289 - 24860531
Alignment:
| Q |
504 |
ttcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaaca |
603 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||| || || |||||||||||||| || || ||||| || || || ||||| | ||| | |
|
|
| T |
24860289 |
ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagcc |
24860388 |
T |
|
| Q |
604 |
accggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaac |
703 |
Q |
| |
|
||||||||| | ||||| ||||| |||| ||||| ||||| ||||| ||||| || || || ||||| || || | || || ||| | ||||| |||| |
|
|
| T |
24860389 |
accggcggagtgaagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaac |
24860488 |
T |
|
| Q |
704 |
ttccattccagcgtcttgttcgtgaaattgctcagaatttcaa |
746 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
24860489 |
ttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa |
24860531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 46076499 - 46076402
Alignment:
| Q |
47 |
tatttaattattaagggatgaagttttaattcaaacatctcatggagaag-ggggtataagttttacttttcaaaataggcggtgtatattttaacat |
143 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| |||||||| | |||| || |||||| ||||||||||||||| | | |||||||||||||||| |
|
|
| T |
46076499 |
tatttaattattaagggatgtggttgtaattcaatcatctcatagggaagaggagtataaattttacttttcaaaagatgtagtgtatattttaacat |
46076402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 46490613 - 46490686
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttttacttttcaa |
119 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||| |||||||||| || ||| |||||||||||| ||||||| |
|
|
| T |
46490613 |
atatttaattatcaagggagagagttgtaattcaagcatctcatggggaggggagtataagttttatttttcaa |
46490686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 10037203 - 10037267
Alignment:
| Q |
57 |
ttaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaa |
120 |
Q |
| |
|
|||||||| || ||| ||||||||| ||||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
10037203 |
ttaagggaggatgttgtaattcaaatatctcatagaaaaggggagtataagttttacttttcaaa |
10037267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 705 - 746
Target Start/End: Complemental strand, 44771153 - 44771112
Alignment:
| Q |
705 |
tccattccagcgtcttgttcgtgaaattgctcagaatttcaa |
746 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaa |
44771112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 47930711 - 47930670
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctc |
87 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
47930711 |
atatttaattattaagggatgaggttgtaattcaagcatctc |
47930670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 746 - 850
Target Start/End: Complemental strand, 7594274 - 7594170
Alignment:
| Q |
746 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
845 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
7594274 |
agacggatctgagattccagagccatgcagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaat |
7594175 |
T |
|
| Q |
846 |
tcatg |
850 |
Q |
| |
|
||||| |
|
|
| T |
7594174 |
tcatg |
7594170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 656 - 747
Target Start/End: Complemental strand, 7594492 - 7594401
Alignment:
| Q |
656 |
gtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaag |
747 |
Q |
| |
|
||||||| |||||||| |||||| |||| || ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7594492 |
gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaag |
7594401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 673 - 747
Target Start/End: Original strand, 18492719 - 18492794
Alignment:
| Q |
673 |
cagaagggtacc-gaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaag |
747 |
Q |
| |
|
|||||| ||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
18492719 |
cagaagagtacctgaattttttatccgtaaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaag |
18492794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 580
Target Start/End: Complemental strand, 7594984 - 7594905
Alignment:
| Q |
501 |
cgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaagg |
580 |
Q |
| |
|
|||||| ||||| ||||| |||||||| ||||||| || ||| ||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
7594984 |
cgattccatggctcgtaccaagcaaaccgctcgcaagtctaccggtggtaaggctccaaggaagcagctcgccaccaagg |
7594905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 390
Target Start/End: Complemental strand, 7595232 - 7595109
Alignment:
| Q |
268 |
ccacgttggcaatcctcaacatcacaaaacaaccaataagatacaagcacatggattacaattaatatttctaattaaaaaa-taatcataaccgttgaa |
366 |
Q |
| |
|
||||| ||||||||| |||| ||| ||| |||||||||| | |||| |||| |||| || ||||||||| | |||||||| | ||||| ||||||||| |
|
|
| T |
7595232 |
ccacgctggcaatccgcaacttcataaaccaaccaataataaacaaccacacggatcgcacttaatattttcacttaaaaaactcatcattaccgttgaa |
7595133 |
T |
|
| Q |
367 |
gcatgcaacgtccaagatcactct |
390 |
Q |
| |
|
|||| ||| ||||| |||| |||| |
|
|
| T |
7595132 |
gcattcaaagtccacgatctctct |
7595109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 19071861 - 19071762
Alignment:
| Q |
47 |
tatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaataggcggtgtatattttaacataa |
145 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||| ||||| || ||| ||||| |||||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
19071861 |
tatttaattattaagggaggtggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcacgggagggagtgtatattttaacataa |
19071762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 19119751 - 19119652
Alignment:
| Q |
47 |
tatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaataggcggtgtatattttaacataa |
145 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||| ||||| || ||| ||||| |||||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
19119751 |
tatttaattattaagggaggtggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcacgggagggagtgtatattttaacataa |
19119652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 4007704 - 4007603
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaatag-gcggtgtatattttaacat |
143 |
Q |
| |
|
||||||||||||||||||| | | | |||||||| ||||| || | |||| || |||||| |||||||||||||| || | ||||||||||||||||| |
|
|
| T |
4007704 |
atatttaattattaagggagggggatgtaattcaagcatcttatagggaagaggagtataaattttacttttcaaaggagaggggtgtatattttaacat |
4007605 |
T |
|
| Q |
144 |
aa |
145 |
Q |
| |
|
|| |
|
|
| T |
4007604 |
aa |
4007603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 737
Target Start/End: Original strand, 18471108 - 18471173
Alignment:
| Q |
673 |
cagaagggtacc-gaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctca |
737 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||| ||||||||| || |||||||| |||||||| |||| |
|
|
| T |
18471108 |
cagaagagtacctgaacttttgatccataagcttccattcgagtgtcttgtttgtgaaatttctca |
18471173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 35383515 - 35383590
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaaggggg--tataagttttacttttcaaa |
120 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||| |||| | ||| |||| | |||||||||||||||||| |
|
|
| T |
35383515 |
atatttaattattaaggaa-gaagttgtaattcaaacatttcatagggaaaggggagtgtaagttttacttttcaaa |
35383590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 616 - 830
Target Start/End: Original strand, 21317429 - 21317643
Alignment:
| Q |
616 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagc |
715 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || || |||||||| || || ||||| |||||| | || || ||| |||| | |||||||||||||| | |
|
|
| T |
21317429 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaac |
21317528 |
T |
|
| Q |
716 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
815 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || ||| | |||||||||||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
21317529 |
gtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttgg |
21317628 |
T |
|
| Q |
816 |
tttgtttgaggatac |
830 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
21317629 |
tttgtttgaagatac |
21317643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 23233017 - 23232942
Alignment:
| Q |
45 |
aatatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaa |
119 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||| ||||| || ||| ||||| |||||| ||||||||||||| |
|
|
| T |
23233017 |
aatatttaattattgagggatgaggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcaa |
23232942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 746
Target Start/End: Complemental strand, 3930216 - 3930104
Alignment:
| Q |
634 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattg |
733 |
Q |
| |
|
||||| |||||||| || ||||||||||| || |||||||||||| | || |||||| | || | |||||||||||||| | | ||||||||||| | |
|
|
| T |
3930216 |
cgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttcgtgaaatcg |
3930117 |
T |
|
| Q |
734 |
ctcagaatttcaa |
746 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
3930116 |
ctcaggatttcaa |
3930104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 33869870 - 33869944
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaa |
119 |
Q |
| |
|
|||||||| |||||||||| || ||| |||||||||||||| || |||| ||| |||||| ||||||||||||| |
|
|
| T |
33869870 |
atatttaactattaagggaggaggttgtaattcaaacatcttataagagaggggagtataaattttacttttcaa |
33869944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 38987904 - 38987803
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaatag-gcggtgtatattttaacat |
143 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||| || || || ||| || ||| ||||||||||||| | || | |||||||||||||||| |
|
|
| T |
38987904 |
atatttaattattaagggagggggttgtaattcaaacatcttataggggaggggagtgtaaattttacttttcaagagagtggagtgtatattttaacat |
38987805 |
T |
|
| Q |
144 |
aa |
145 |
Q |
| |
|
|| |
|
|
| T |
38987804 |
aa |
38987803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 11551 - 11653
Alignment:
| Q |
44 |
taatatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaaca |
142 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| ||||| || | | ||||||||||| ||||||||||||| | ||| | ||||||| ||||||| |
|
|
| T |
11551 |
taatatttaattattaagggatgaggttgtaattcaagcatcttataggggagggggtataaattttacttttcaagagaggggagtgtataatttaaca |
11650 |
T |
|
| Q |
143 |
taa |
145 |
Q |
| |
|
||| |
|
|
| T |
11651 |
taa |
11653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 830
Target Start/End: Original strand, 30867 - 31080
Alignment:
| Q |
616 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagc |
715 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || || |||||||| || || ||||| |||||| | || || ||| |||| | ||||||| |||||| | |
|
|
| T |
30867 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaac |
30965 |
T |
|
| Q |
716 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
815 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || || | |||||||||||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
30966 |
gtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
31065 |
T |
|
| Q |
816 |
tttgtttgaggatac |
830 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
31066 |
tttgtttgaagatac |
31080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 26504 - 26430
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaa |
119 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||||| || ||||||||| |||| | ||||||||||||| |
|
|
| T |
26504 |
atatttaattattaagggatgatgttgtaattcaagcatcttataggagaagggagtatcaattttacttttcaa |
26430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 9830429 - 9830354
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaa--gggggtataagttttacttttcaa |
119 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| |||||||||| | | |||||||||| ||||| ||||||| |
|
|
| T |
9830429 |
atatttaattattaagggatgaggttgtaattcaagcatctcatgggggagggggggtataacttttatttttcaa |
9830354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 3090341 - 3090441
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacata |
144 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||| ||||| || | | ||||||||||| |||| |||||||| ||| | ||||||||||||||||| |
|
|
| T |
3090341 |
atatttaattattaagggagggggttgtaattcaagcatcttataggggagggggtataaattttccttttcaagggaggggagtgtatattttaacata |
3090440 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
3090441 |
a |
3090441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 33978709 - 33978609
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcggtgtatattttaacata |
144 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||| || || || | | |||||| |||||||||||||| ||| | | |||||||||||||| |
|
|
| T |
33978709 |
atatttaattattaagggagggggttgtaattcaaacatcttataggggaggagagtataaattttacttttcaaaggaggggatatatattttaacata |
33978610 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
33978609 |
a |
33978609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 30127746 - 30127675
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttactttt |
116 |
Q |
| |
|
||||||||| | ||||||| | |||| ||||||||||||||||| ||| ||||| |||||| |||||||||| |
|
|
| T |
30127746 |
atatttaataaataagggagggagttgtaattcaaacatctcatagaggaggggagtataaattttactttt |
30127675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 17058385 - 17058458
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggggtataagttttacttttcaa |
119 |
Q |
| |
|
|||||||||||||||| || | ||| |||||||| |||||||||| || | | |||||||||||| ||||||| |
|
|
| T |
17058385 |
atatttaattattaagagaggcggttgtaattcaagcatctcatggggaggcgagtataagttttatttttcaa |
17058458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 13489618 - 13489517
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat---ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaac |
141 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||||||| |||||| | |||||| ||||||| ||||||||| | | || ||||||||||| |
|
|
| T |
13489618 |
atatttaattattaagggaggaatttgtaattcaaacatctcataagggagaa--gagtataaattttactattcaaaatatgagagtatatattttaac |
13489521 |
T |
|
| Q |
142 |
ataa |
145 |
Q |
| |
|
|||| |
|
|
| T |
13489520 |
ataa |
13489517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 28713484 - 28713537
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg |
99 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||| || ||| ||||| |
|
|
| T |
28713484 |
atatttaattattaagggatgaggttgtaattcaaacatcttatagaggagggg |
28713537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 21802528 - 21802628
Alignment:
| Q |
47 |
tatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaataggcg-gtgtatattttaacata |
144 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||| ||||| || ||| ||||| |||||| ||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
21802528 |
tatttaattattaagggagggggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcaagggaggggagtgtatattttaacata |
21802627 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
21802628 |
a |
21802628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 59411 - 59311
Alignment:
| Q |
47 |
tatttaattattaagggatgaagttttaattcaaacatctcatggagaagggg-gtataagttttacttttcaaaataggcg-gtgtatattttaacata |
144 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||| ||||| || ||| ||||| |||||| ||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
59411 |
tatttaattattaagggagggggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcaagggaggggagtgtatattttaacata |
59312 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
59311 |
a |
59311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 11441 - 11340
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattcaaacatctcat-ggagaagggggtataagttttacttttcaaaataggcg-gtgtatattttaacat |
143 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||| ||||| || || |||||| || ||| ||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
11441 |
atatttaattattaagggagggggttgtaattcaagcatcttataggggaagggagtgtaaattttacttttcaagggaggggagtgtatattttaacat |
11342 |
T |
|
| Q |
144 |
aa |
145 |
Q |
| |
|
|| |
|
|
| T |
11341 |
aa |
11340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 736 - 769
Alignment:
| Q |
46 |
atatttaattattaagggatgaagttttaattca |
79 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
736 |
atatttaattattaagggatgaagttgtaattca |
769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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