View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16800_low_3 (Length: 597)
Name: NF16800_low_3
Description: NF16800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16800_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 202 - 590
Target Start/End: Original strand, 30665639 - 30666027
Alignment:
| Q |
202 |
gtaccgatggattggccggggaaggtgtcaacaatcttgacaatgtcatcttttgcgatattgtcatggcggaaaattccaatgcagacaccaatacggt |
301 |
Q |
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| T |
30665639 |
gtaccgatggattggccggggaaggtgtcaacaatcttgacaatgtcatcttttgcgatattgtcatggcggaaaattccaatgcagacaccaatacggt |
30665738 |
T |
|
| Q |
302 |
cttctcttgtaggagcccagtagaatttctccatacgacgatcacggatgagaggagcataaagtgttgagaaatcattaccggtgacaatgatgggcac |
401 |
Q |
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| T |
30665739 |
cttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcgttaccggtgacaatgatgggcac |
30665838 |
T |
|
| Q |
402 |
acgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgaca |
501 |
Q |
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| T |
30665839 |
acgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgaca |
30665938 |
T |
|
| Q |
502 |
gtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgatgatgtc |
590 |
Q |
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| T |
30665939 |
gtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgataatgtc |
30666027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 30665450 - 30665596
Alignment:
| Q |
1 |
aaacactggtggtccttcctttgagttcacaagcttctttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactcta |
100 |
Q |
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| T |
30665450 |
aaacactggtggtccgtcctttgagttcacaagcttctttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactcta |
30665549 |
T |
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| Q |
101 |
gccctcaatgcaccgaagaaatctgcaacaataatagctcgtaaata |
147 |
Q |
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| T |
30665550 |
gccctcaatgcaccgaagaaatctgcaacaataatagctcgtaaata |
30665596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 289 - 578
Target Start/End: Original strand, 34435088 - 34435376
Alignment:
| Q |
289 |
acaccaatacggtcttctcttgtaggagcccagtagaatttctccatacgacgatcacggatgagaggagcataaagtgttgagaaatcattaccggtga |
388 |
Q |
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| T |
34435088 |
acaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaa |
34435187 |
T |
|
| Q |
389 |
caatgatgggcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccat |
488 |
Q |
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| T |
34435188 |
caatgataggcacacgtgcattctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccat |
34435287 |
T |
|
| Q |
489 |
ctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttccctt |
578 |
Q |
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| T |
34435288 |
ttgattgttcactgtgtactgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacat-tttccctt |
34435376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 34434743 - 34434857
Alignment:
| Q |
11 |
ggtccttcctttgagttcacaagcttctttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactctagccctcaatg |
110 |
Q |
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|||||||| ||||||||||||||||| || ||||| |||||||| ||||| |||| || |||||| |||||||||||||| || ||||| ||||| | || |
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| T |
34434743 |
ggtccttcttttgagttcacaagctttttcccaatggtttcaatgccaacaccagcaatccactttctcacttcatcatcatatactcttgccctaagtg |
34434842 |
T |
|
| Q |
111 |
caccgaagaaatctg |
125 |
Q |
| |
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|||| |||||||||| |
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| T |
34434843 |
caccaaagaaatctg |
34434857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 310 - 590
Target Start/End: Original strand, 6853480 - 6853760
Alignment:
| Q |
310 |
gtaggagcccagtagaatttctccatacgacgatcacggatgagaggagcataaagtgttgagaaatcattaccggtgacaatgatgggcacacgagcgt |
409 |
Q |
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||||| |||||||||||||| |||||||| | |||||| || | ||||||||| | || ||||| ||||| || ||||| ||||| || || || || | |
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| T |
6853480 |
gtaggtgcccagtagaatttttccatacgtccatcacgaattaaaggagcatacaacgtagagaagtcattgccagtgacgatgatagggacgcgggcat |
6853579 |
T |
|
| Q |
410 |
tatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgacagtgtattg |
509 |
Q |
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| T |
6853580 |
tctcttctttgttgtacataccgggaagttgaacattggtagggttgtcagcaatgttcatgagggttgcatttaccatctggttgttgactgtgtattg |
6853679 |
T |
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| Q |
510 |
tgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgatgatgtc |
590 |
Q |
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| T |
6853680 |
agtagtgccacccattctaccagctcctgcatcaagatcattgatgaagagacagcacatctttccttttctgataatgtc |
6853760 |
T |
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