View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16800_low_5 (Length: 302)
Name: NF16800_low_5
Description: NF16800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16800_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 42667082 - 42667350
Alignment:
| Q |
19 |
gaagccgccgtcgttaccacaaccggcgccgctcaaggtgccgctattggtgctttcctgggtactctcaccggtgatgcatcttccgcttttcctactc |
118 |
Q |
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| T |
42667082 |
gaagccgccgtcgttaccacaaccggcgccgctcaaggtgccgctattggtgctttcctgggtactctcaccggtgatgcatcttccgcttttcctactc |
42667181 |
T |
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| Q |
119 |
ctccacctaatgcctctcttaaccctcaagccatggcttctcttcaacaagcacaggtttcatcgaattttctatgtgtaatttgataacctaannnnnn |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667182 |
ctccacctaatgcttctcttaaccctcaagccatggcttctcttcaacaagcacaggtttcatcgaattttctatgtgtaatttgataacctaa-ttgtt |
42667280 |
T |
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| Q |
219 |
nnnnnnnnnngttgaatttgaaaagttagggttggttgtttatgatattgtaggctcttgctggaggtcc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667281 |
tttaatttttgttgaatttgaaaagttagggttggttgtttatgatattgtaggctcttgctggaggtcc |
42667350 |
T |
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