View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16800_low_7 (Length: 235)

Name: NF16800_low_7
Description: NF16800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16800_low_7
NF16800_low_7
[»] chr2 (2 HSPs)
chr2 (24-222)||(39740939-39741137)
chr2 (124-178)||(3591835-3591889)
[»] chr4 (2 HSPs)
chr4 (129-214)||(22483454-22483539)
chr4 (144-222)||(7435211-7435289)
[»] chr8 (3 HSPs)
chr8 (150-220)||(28437331-28437401)
chr8 (129-208)||(9593613-9593692)
chr8 (129-178)||(33823812-33823861)
[»] chr3 (2 HSPs)
chr3 (151-222)||(34976185-34976256)
chr3 (117-178)||(41895775-41895836)
[»] chr5 (1 HSPs)
chr5 (124-209)||(13481011-13481096)
[»] chr1 (2 HSPs)
chr1 (129-222)||(34645977-34646070)
chr1 (150-222)||(24878863-24878935)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 222
Target Start/End: Original strand, 39740939 - 39741137
Alignment:
Q  24 gtgatgcagcaaatgtcaagccaatcatcaatggaaaacatgttaggttgctcaaaagaagagcaagaaaggaagccaaaacctcaaccagaacaagctt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39740939 gtgatgcagcaaatgtcaagccaatcatcaatggaaaacatgttaggttgctcaaaagaagagcaagaaaggaagccaaaacctcaaccagaacaagctt 39741038  T
Q  124 tgaattgtccaagatgcaactcaaccaacaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39741039 tgaattgtccaagatgcaactcaaccaacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggt 39741137  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 3591835 - 3591889
Alignment:
Q  124 tgaattgtccaagatgcaactcaaccaacaccaaattctgttactacaacaacta 178  Q
    ||||||||||||||||  |||| || || |||||||| |||||||||||||||||    
T  3591835 tgaattgtccaagatgtgactctacaaataccaaattttgttactacaacaacta 3591889  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 22483539 - 22483454
Alignment:
Q  129 tgtccaagatgcaactcaaccaacaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaaatcttg 214  Q
    |||||||||||  |||||| |||||||||||| |||||||||||||| ||||||||| | || ||||||||||||||||| |||||    
T  22483539 tgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttg 22483454  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 7435211 - 7435289
Alignment:
Q  144 tcaaccaacaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggt 222  Q
    ||||||||||| ||||| || |||| |||||||||||||||  ||||||| ||| | ||||||||  ||||||||||||    
T  7435211 tcaaccaacacaaaattttgctacttcaacaactacagtctctctcagcccagacacttctgcaagacttgcagaaggt 7435289  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 28437331 - 28437401
Alignment:
Q  150 aacaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaag 220  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| | ||||||||    
T  28437331 aacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaag 28437401  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 9593692 - 9593613
Alignment:
Q  129 tgtccaagatgcaactcaaccaacaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaa 208  Q
    |||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| || || |||||||| || |||||    
T  9593692 tgtccaaggtgcaattcaaccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaa 9593613  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 33823812 - 33823861
Alignment:
Q  129 tgtccaagatgcaactcaaccaacaccaaattctgttactacaacaacta 178  Q
    |||||||||||| ||||| | ||||| ||||| |||||||||||||||||    
T  33823812 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaacta 33823861  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 34976256 - 34976185
Alignment:
Q  151 acaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggt 222  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||||| || ||||||||  |||| |||||||    
T  34976256 acaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggt 34976185  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 41895775 - 41895836
Alignment:
Q  117 caagctttgaattgtccaagatgcaactcaaccaacaccaaattctgttactacaacaacta 178  Q
    |||||||| || |||||||| ||||| ||||| ||||| ||||||||||||||||| |||||    
T  41895775 caagctttaaactgtccaaggtgcaattcaactaacacaaaattctgttactacaataacta 41895836  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 13481011 - 13481096
Alignment:
Q  124 tgaattgtccaagatgcaactcaaccaacaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaaa 209  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||||||| ||  | || || |||||| |||||||||||    
T  13481011 tgaagtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaa 13481096  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 34645977 - 34646070
Alignment:
Q  129 tgtccaagatgcaactcaaccaacaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggt 222  Q
    |||||||| || || ||||  ||||| ||||| ||||||||||||||||| ||| | || || |||||||||||||||||| | || |||||||    
T  34645977 tgtccaaggtgtaattcaattaacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggt 34646070  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 24878863 - 24878935
Alignment:
Q  150 aacaccaaattctgttactacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggt 222  Q
    ||||| |||||||| |||||||| ||||||||  | ||||| ||||||||||| ||||||   ||||||||||    
T  24878863 aacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggt 24878935  T

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