View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16801_high_1 (Length: 823)
Name: NF16801_high_1
Description: NF16801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16801_high_1 |
 | |
|
| [»] chr4 (13 HSPs) |
| |
|
| [»] scaffold0024 (2 HSPs) |
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|
Alignment Details
Target: chr4 (Bit Score: 761; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 1 - 823
Target Start/End: Original strand, 30264421 - 30265251
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264421 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
30264520 |
T |
|
| Q |
101 |
ggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264521 |
ggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgat |
30264620 |
T |
|
| Q |
201 |
cttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgttat |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30264621 |
cttttggatttacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgttat |
30264720 |
T |
|
| Q |
301 |
atgatagatatgtaaggaaatataaacactaaaacacat-aaaaagtacgtactattatggaggagaagcgtggattgataggtaagaacaaatgttgga |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264721 |
atgataaatatgtaaggaaatataaacactaaaacacataaaaaagtacgtactattatggaggagaagcgtggattgataggtaagaacaaatgttgga |
30264820 |
T |
|
| Q |
400 |
tcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacatatgaacataggggaggggtgttgaagtattgtccacttgg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30264821 |
tcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacatatgaacataggggaggggtgttgaaatattgtccacttgg |
30264920 |
T |
|
| Q |
500 |
acttactggctcagttacatcttcaaagttgtccattgattatactatgcactaagcacttgtattttcaatg-------ttggcactgggtacttactt |
592 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30264921 |
acttactggctcagttagatcttcaaagttgtccattgattatactatgcactaagcacttgtattttcaatgttggcacttggcactgggtacttactt |
30265020 |
T |
|
| Q |
593 |
atagcatgccagcacaatttgattggatcctcacacctggtgtgacattcatgccagcacaatttcattatatttccataatttgttttacatagtctca |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30265021 |
atagcatgccagcacaatttgattggatcctcacatctggtgtgacattcatgccagcacaatttcattatatttccataatttgttttacatagtctca |
30265120 |
T |
|
| Q |
693 |
cacctcttcttttgtcataaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttttgatcataaacgtggctcttgaacgggta |
792 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30265121 |
cacctcttcttttgtcctaaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttttgatcataaacgtggctcttgaacgggta |
30265220 |
T |
|
| Q |
793 |
aaaattgtactggtagctagtaatgagtaaa |
823 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
30265221 |
aaaattgtactggtagctagtaatgtgtaaa |
30265251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 1 - 823
Target Start/End: Complemental strand, 30287767 - 30286937
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287767 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
30287668 |
T |
|
| Q |
101 |
ggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287667 |
ggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgat |
30287568 |
T |
|
| Q |
201 |
cttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcacatgcacatgttaatatttgttat |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30287567 |
cttttggatttacctctacttttttccatttcatatttccatctttatctctcacctatatacatggttgcatgcatatgcacatgttaatatttgttat |
30287468 |
T |
|
| Q |
301 |
atgatagatatgtaaggaaatataaacactaaaacacata-aaaagtacgtactattatggaggagaagcgtggattgataggtaagaacaaatgttgga |
399 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287467 |
atgataaatatgtaaggaaatataaacactaaaacacataaaaaagtacgtactattatggaggagaagcgtggattgataggtaagaacaaatgttgga |
30287368 |
T |
|
| Q |
400 |
tcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacatatgaacataggggaggggtgttgaagtattgtccacttgg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30287367 |
tcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacatatgaacataggggaggggtgttgaaatattgtccacttgg |
30287268 |
T |
|
| Q |
500 |
acttactggctcagttacatcttcaaagttgtccattgattatactatgcactaagcacttgtattttcaatg-------ttggcactgggtacttactt |
592 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30287267 |
acttactggctcagttagatcttcaaagttgtccattgattatactatgcactaagcacttgtattttcaatgttggcacttggcactgggtacttactt |
30287168 |
T |
|
| Q |
593 |
atagcatgccagcacaatttgattggatcctcacacctggtgtgacattcatgccagcacaatttcattatatttccataatttgttttacatagtctca |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287167 |
atagcatgccagcacaatttgattggatcctcacatctggtgtgacattcatgccagcacaatttcattatatttccataatttgttttacatagtctca |
30287068 |
T |
|
| Q |
693 |
cacctcttcttttgtcataaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttttgatcataaacgtggctcttgaacgggta |
792 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287067 |
cacctcttcttttgtcctaaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttttgatcataaacgtggctcttgaacgggta |
30286968 |
T |
|
| Q |
793 |
aaaattgtactggtagctagtaatgagtaaa |
823 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
30286967 |
aaaattgtactggtagctagtaatgtgtaaa |
30286937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 349 - 823
Target Start/End: Complemental strand, 30280520 - 30280044
Alignment:
| Q |
349 |
gtactattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaa |
448 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
30280520 |
gtaccattatggaggagaagcgtggattgataggtaagaa---attttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaa |
30280424 |
T |
|
| Q |
449 |
tccaaaaacatatgaacataggggaggggtgttgaagtattgtccacttggacttactggctcagttacatcttcaaagttgtccattgattatactatg |
548 |
Q |
| |
|
||| ||| |||||||||||| ||| || || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30280423 |
tccgaaa-catatgaacataagggtggtgtattgaagaattgtccacttggacttactggctcagttagatcttcaaagttgtccattgattatactatg |
30280325 |
T |
|
| Q |
549 |
cactaagcacttgtattttcaatgttggcact-------gggtacttacttatagcatgccagcacaatttgattggatcctcacacctggtgtgacatt |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30280324 |
cactaagcacttgtattttcaatgttggcacttggcactgggtacttacttatagcatgccagcacaatttgattggatcctcacatctggtgtgacatt |
30280225 |
T |
|
| Q |
642 |
catgccagcacaatttcattatatttccataatttgttttacatagtctcacacctcttcttttgtcataaaataaaaaagaagataaaatttgcaaatt |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30280224 |
catgccagcacaatttcattatatttccataatttgttttacatagtctcacacctcttcttttgtcctaaaataaaaaagaagataaaatttgcaaatt |
30280125 |
T |
|
| Q |
742 |
tgaatatattttcatttccttttgatcataaacgtggctcttgaacgggtaaaaattgtactggtagctagtaatgagtaaa |
823 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
30280124 |
tgaatatattttcatttccttttgatcataaacgtggctcttgaacgggt-aaaattgtactggtagctagtaatgtgtaaa |
30280044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 349 - 536
Target Start/End: Original strand, 30271695 - 30271882
Alignment:
| Q |
349 |
gtactattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaa |
448 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| | |||||||| ||||||||||| |||||| |||||||||||||||| | |||||||||| |
|
|
| T |
30271695 |
gtaccattatggaggagaaacgtggattgataggtaagaagacatgttggaacaaatacatagtttgagaatcatcaattggaatttgtgattccaaaaa |
30271794 |
T |
|
| Q |
449 |
tccaaaaacatatgaacataggggaggggtgttgaagtattgtccacttggacttactggctcagttacatcttcaaagttgtccatt |
536 |
Q |
| |
|
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
30271795 |
tccgaaaacatatgaacataggggtggtgtgttgaagtattgtccacttggacttactggctcggttacatattcaaagttgtccatt |
30271882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 349 - 536
Target Start/End: Original strand, 30304736 - 30304920
Alignment:
| Q |
349 |
gtactattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaa |
448 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
30304736 |
gtaccattatggaggagaagcgtggattgataggtaagaa---attttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaa |
30304832 |
T |
|
| Q |
449 |
tccaaaaacatatgaacataggggaggggtgttgaagtattgtccacttggacttactggctcagttacatcttcaaagttgtccatt |
536 |
Q |
| |
|
||| |||||||||||||||| ||| || || |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30304833 |
tccgaaaacatatgaacataagggtggtgtattgaagaattgtccacttggacttactggctctgttacatcttcaaagttgtccatt |
30304920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 30271315 - 30271576
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | || |||||| ||||||||||| || || | ||||||||||||||| |||||||||| | |
|
|
| T |
30271315 |
accatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcatttcttgttggatatttaattaaatgtatttcccaaagtggtttgtcttgt |
30271414 |
T |
|
| Q |
101 |
ggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgat |
200 |
Q |
| |
|
||||| ||||| || | |||||||||||||| |||||||||| |||||||| ||||||||||| ||| |||||||||| | |||||| | | ||||| |
|
|
| T |
30271415 |
ggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaacgtgcatatgat |
30271514 |
T |
|
| Q |
201 |
cttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
262 |
Q |
| |
|
||| || || |||||||| |||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
30271515 |
cttcaggcttcacctctacctttttccatttcattttgccatctttgtctctcacctatata |
30271576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 30280874 - 30280613
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | || |||||||||||||||||| || || | ||| ||||||||||| |||||||||| | |
|
|
| T |
30280874 |
accatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgt |
30280775 |
T |
|
| Q |
101 |
ggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgat |
200 |
Q |
| |
|
||||| ||||| || | |||||||||||||| |||||||||| |||||||| ||||||||||| ||| |||||||||| | ||||||||| | ||||| |
|
|
| T |
30280774 |
ggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaaccttcatatgat |
30280675 |
T |
|
| Q |
201 |
cttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
262 |
Q |
| |
|
||| || || |||||| ||||||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
30280674 |
cttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata |
30280613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 30304382 - 30304643
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | || |||||||||||||||||| || || | ||| ||||||||||| |||||||||| | |
|
|
| T |
30304382 |
accatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgt |
30304481 |
T |
|
| Q |
101 |
ggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaaccttaaaatgat |
200 |
Q |
| |
|
||||| ||||| || | |||||||||||||| |||||||||| |||||||| ||||||||||| ||| |||||||||| | ||||||||| | ||||| |
|
|
| T |
30304482 |
ggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaaccttcatatgat |
30304581 |
T |
|
| Q |
201 |
cttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
262 |
Q |
| |
|
||| || || |||||| ||||||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
30304582 |
cttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata |
30304643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30048619 - 30048723
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| | |
|
|
| T |
30048619 |
accatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgt |
30048718 |
T |
|
| Q |
101 |
ggtgt |
105 |
Q |
| |
|
||||| |
|
|
| T |
30048719 |
ggtgt |
30048723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30062960 - 30063064
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtctttt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||| | |
|
|
| T |
30062960 |
accatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgt |
30063059 |
T |
|
| Q |
101 |
ggtgt |
105 |
Q |
| |
|
||||| |
|
|
| T |
30063060 |
ggtgt |
30063064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 30228758 - 30228850
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggttt |
93 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
30228758 |
accatcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggttgttggataattgataatatgaatttcccaaagtggttt |
30228850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 30032377 - 30032483
Alignment:
| Q |
5 |
tcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||| ||| ||||||||||| ||||| |||| ||||| |
|
|
| T |
30032377 |
tcaccaagtgcatgatgaagtttgaatattatggtgcaagcttcattggttgttggataattgataatatgaatttcccaaagtggtttatcttgtggtg |
30032476 |
T |
|
| Q |
105 |
tcctttc |
111 |
Q |
| |
|
| ||||| |
|
|
| T |
30032477 |
ttctttc |
30032483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 360 - 468
Target Start/End: Complemental strand, 30219893 - 30219785
Alignment:
| Q |
360 |
gaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacat |
459 |
Q |
| |
|
|||||||| |||||||||||||| | ||| | || || | |||| ||||| ||| ||||||||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
30219893 |
gaggagaaacgtggattgataggaaggaagacatctttaagcaaaggcatagtttgtgagtcatcaattggaatagctaattccagaaacccaaaaacat |
30219794 |
T |
|
| Q |
460 |
atgaacata |
468 |
Q |
| |
|
||||||||| |
|
|
| T |
30219793 |
atgaacata |
30219785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 79593 - 79679
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaag |
87 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| |||||| |||||||| |
|
|
| T |
79593 |
accatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgtatctcccaaag |
79679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 72529 - 72612
Alignment:
| Q |
1 |
accatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgtatttccca |
84 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| ||| |||||||| |
|
|
| T |
72529 |
accatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgaatttccca |
72612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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