View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16801_high_3 (Length: 401)
Name: NF16801_high_3
Description: NF16801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16801_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 6236461 - 6236083
Alignment:
| Q |
16 |
tcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactata |
115 |
Q |
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| T |
6236461 |
tcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactaaa |
6236362 |
T |
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| Q |
116 |
atttagaaacaccatgatattattgccttgaccggtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggat |
215 |
Q |
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| T |
6236361 |
atttagaaacaccatgatat-attgccttgaccagtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggat |
6236263 |
T |
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| Q |
216 |
gtgtttaccttttgtgttatttcttcttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacaccc |
315 |
Q |
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| T |
6236262 |
gtgtttaccttttgtgttatttcttgttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacaccc |
6236163 |
T |
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| Q |
316 |
attctacacccaagatataaataaa----tnnnnnnnntagagaaagtgatatgataattgtgatacattgatgatgatg |
391 |
Q |
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| T |
6236162 |
attctacacccaagatataaaaaaaaattaaaaaaaaatagagaaagtgatatgataattgtgatacattgatgatgatg |
6236083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 6240435 - 6240344
Alignment:
| Q |
206 |
agatatggatgtgtttaccttttgtgttatttcttcttcatttcgttct-tataaatcaaaaaacatagtgacattgattaggaaaataatc |
296 |
Q |
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| T |
6240435 |
agatatggatgtgtttaccttttgtgttatttcatgttcatttgtttgtatataaatcaaaaaacatagtgatgttgattaggaaaataatc |
6240344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 33891841 - 33891908
Alignment:
| Q |
46 |
taactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacacta |
113 |
Q |
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| T |
33891841 |
taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtggggacacta |
33891908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 33952407 - 33952340
Alignment:
| Q |
46 |
taactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacacta |
113 |
Q |
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| T |
33952407 |
taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtggggacacta |
33952340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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