View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16801_high_5 (Length: 353)
Name: NF16801_high_5
Description: NF16801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16801_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 6236105 - 6235772
Alignment:
| Q |
1 |
attgtgatacattgatgatgatgaattgttcaatgagttgaaaattaaaaattgagatgtataaatattgttactctattattattggtttgcactatag |
100 |
Q |
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| T |
6236105 |
attgtgatacattgatgatgatgaattgttcaatgagttgaaaattaaaaattgagatgtataaatattgttactctattattattggtttgcacta--g |
6236008 |
T |
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| Q |
101 |
ctatggggctaagtaatgactatgctctgcattcatattagagttagaatataacattttcttcacaaaatagtctatgaacaagttattttgttattga |
200 |
Q |
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| T |
6236007 |
ctatggggctaagtaatgactatgctctgcattcatattagagttagaatataacattttcttcacaaaatagtcc-tgaacaagttattttgttattga |
6235909 |
T |
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| Q |
201 |
aacagatgggaaaagataaagattggctggcttgaccaagaagtaggatatttcatatctgttctatgcggtgacacaaagctggaataattgtatggca |
300 |
Q |
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| T |
6235908 |
aacagatgggaaaagataaagattggctggcttgaccaagaagtaggatatttcatatctgttctatgcggtgacacaaagctggaataattgtacggca |
6235809 |
T |
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| Q |
301 |
aagctatcggtcgtttcacaatcaaagataatgtcac |
337 |
Q |
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| T |
6235808 |
aagctatcggtcgtttcacaatcaaagataatgtcac |
6235772 |
T |
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