View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16801_high_6 (Length: 337)
Name: NF16801_high_6
Description: NF16801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16801_high_6 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 140403 - 140088
Alignment:
| Q |
16 |
atttcttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcatatgcttgaaatgcaaagatacttgggttaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
140403 |
atttcttcaagtcttaactttccttgtgatgatttttttgcagtttcaacaatagctttagttgcatcatatgcttgaaatgcaaagatacttgggttaa |
140304 |
T |
|
| Q |
116 |
tgttatcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatcc |
215 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
140303 |
tgctatcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatcc |
140204 |
T |
|
| Q |
216 |
aacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgccgaacctttttccatcaaa |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
140203 |
aacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaacttcattcgggataatccacgccgaacctttttccatcaaa |
140104 |
T |
|
| Q |
316 |
cctatttcctttgctt |
331 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
140103 |
cctatttcttttgctt |
140088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 149012 - 148697
Alignment:
| Q |
16 |
atttcttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcatatgcttgaaatgcaaagatacttgggttaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
149012 |
atttcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaatagctttagctgcatcatatgcttgaagtgcaaagatacttgggttaa |
148913 |
T |
|
| Q |
116 |
tgttatcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
148912 |
tgttatcttcttcagggtattctagtgcaaactttctttggaatttcaatttcaattttctaaaggtctcattcatttccatgaagcgtgttttaaatcc |
148813 |
T |
|
| Q |
216 |
aacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgccgaacctttttccatcaaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
148812 |
aacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaacttcatttgggataatccacgccgaacctttttccatcaaa |
148713 |
T |
|
| Q |
316 |
cctatttcctttgctt |
331 |
Q |
| |
|
||||||| ||||||| |
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| T |
148712 |
cctatttgttttgctt |
148697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 24897723 - 24897413
Alignment:
| Q |
21 |
ttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcatatgcttgaaatgcaaagatacttgggttaatgtta |
120 |
Q |
| |
|
||||||||| ||||||||||||||| | |||| |||| |||||||||||| ||||| ||||||||||| ||||||| |||||||||||| | || |
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| T |
24897723 |
ttcaagtctgaactttccttgtgataatttatttgcagcttcagcaatagctttagctgcataatatgcttgaagtgcaaagttacttgggttaacgcta |
24897624 |
T |
|
| Q |
121 |
tcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaa |
220 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| || | || ||||||||| || ||||||||| |||||||||||| |
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| T |
24897623 |
tcttcttcagggtattctagtgcaaactttcttcggaataggaatttaaactttctgaaagccttattcatttctatgaagtgtgttctaaatccaacaa |
24897524 |
T |
|
| Q |
221 |
caccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgccgaacctttttccatcaaacctat |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24897523 |
caccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcatccgggataatccacaccgaacctttttccatcaaacctat |
24897424 |
T |
|
| Q |
321 |
ttcctttgctt |
331 |
Q |
| |
|
|| ||||||| |
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|
| T |
24897423 |
ttgttttgctt |
24897413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 24987329 - 24987019
Alignment:
| Q |
21 |
ttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcatatgcttgaaatgcaaagatacttgggttaatgtta |
120 |
Q |
| |
|
||||||||| |||||| |||||||| | |||| |||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||| | || |
|
|
| T |
24987329 |
ttcaagtctgaactttacttgtgataatttatttgcagcttcagcaatagctttagttgcataatatgcttgaagtgcaaagttacttgggttaacgcta |
24987230 |
T |
|
| Q |
121 |
tcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || | || ||||||||| || ||||||||| |||||||||||| |
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|
| T |
24987229 |
tcttcttcagggtattctagtgcaaactttctttggaataggaatttaaactttctgaaagccttattcatttctatgaagtgtgttctaaatccaacaa |
24987130 |
T |
|
| Q |
221 |
caccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgccgaacctttttccatcaaacctat |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24987129 |
caccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccacaccgaacctttttccatcaaacctat |
24987030 |
T |
|
| Q |
321 |
ttcctttgctt |
331 |
Q |
| |
|
|| ||||||| |
|
|
| T |
24987029 |
ttgttttgctt |
24987019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 24909826 - 24909516
Alignment:
| Q |
21 |
ttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcatatgcttgaaatgcaaagatacttgggttaatgtta |
120 |
Q |
| |
|
||||||||| ||||||||||||||| | |||| |||| |||||||||||||||||| ||||||||||| ||||| | |||||||||||| || |
|
|
| T |
24909826 |
ttcaagtctgaactttccttgtgataatttatttgcagcttcagcaatagctttagttgcataatatgcttgaagtgcaatgttacttgggttaacacta |
24909727 |
T |
|
| Q |
121 |
tcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| || || ||||||||| || ||||||||| |||||||||||| |
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|
| T |
24909726 |
tcttcttcagggtattctagtgcaaactttcttcggaataggaatttaaactttctgaaacccttattcatttctatgaagtgtgttctaaatccaacaa |
24909627 |
T |
|
| Q |
221 |
caccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgccgaacctttttccatcaaacctat |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24909626 |
caccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccataccgaacctttttccatcaaacctat |
24909527 |
T |
|
| Q |
321 |
ttcctttgctt |
331 |
Q |
| |
|
|| ||||||| |
|
|
| T |
24909526 |
ttgttttgctt |
24909516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 68 - 318
Target Start/End: Complemental strand, 23421 - 23159
Alignment:
| Q |
68 |
tagctttagtt-gcatcatatgcttgaaatgcaaagatacttgggttaatgttatcttcttcagggta-ttctagtgcaaacttt-ctttgg-aatttga |
163 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||| |||||||||||| | |||||||||||||||| |||||||||||||||| |||||| ||| || |
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|
| T |
23421 |
tagctttagtttgcataatatgcttgaagtgcaaagttacttgggttaacgctatcttcttcagggtagttctagtgcaaacttttctttggtaatagga |
23322 |
T |
|
| Q |
164 |
atttaaattttct--aaaggtctcattcatttcc-ataaagtg-tgttttaaatccaacaacacctt-gcatgttgaagataacagaagagtt-aactga |
257 |
Q |
| |
|
|||| || |||| |||| | ||||||||| || ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
23321 |
attttaaacttcttgaaagcctttattcatttcttatgaagtggtgttctaaatccaacaacaccttagcatgttgaagataacagaagagttaaactga |
23222 |
T |
|
| Q |
258 |
atc-aagaaggccagcaactccattcgggataatccacgccgaacc-tttttccatcaaacct |
318 |
Q |
| |
|
||| ||| ||||||||||| | | ||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
23221 |
atcaaagtaggccagcaacctcgtccgggataatccacaccgaaccttttttccatcaaacct |
23159 |
T |
|
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