View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16801_low_11 (Length: 240)
Name: NF16801_low_11
Description: NF16801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16801_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 41803878 - 41804083
Alignment:
| Q |
17 |
tagggccgcggaaccaagtttcagaacttgaaatggagtccaaagaaagagaaaaggaactatctgttatcaatcttatcatgaagaagctcgaagatac |
116 |
Q |
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| T |
41803878 |
tagggccgcggaaccaagtttcagaacttgaaatggagtccaaagaaagagaaaaggaactatctgttatcaatcttatcatgaagaagctcgaagatac |
41803977 |
T |
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| Q |
117 |
tgaaaagtatgataaagaaaagcagctccagggagctaaagcaggtacaatctctatgcaccatgacttctgaattgtcatatgatggaagctcgtgatg |
216 |
Q |
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| T |
41803978 |
tgaaaagtatgataaagaaaagcagctccagggagctaaagcaggtacaatctctatgtaccatgacttctgaattgtgatatgatggaagctcgcgatg |
41804077 |
T |
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| Q |
217 |
caaaat |
222 |
Q |
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|||||| |
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| T |
41804078 |
caaaat |
41804083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 41810544 - 41810603
Alignment:
| Q |
29 |
accaagtttcagaacttgaaatggagtccaaagaaagagaaaaggaactatctgttatca |
88 |
Q |
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| T |
41810544 |
accaaatttcagaacttgaaatgaagtccaaagaaagagaagaggaactatctgctatca |
41810603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 41796901 - 41796961
Alignment:
| Q |
28 |
aaccaagtttcagaacttgaaatggagtccaaagaaagagaaaaggaactatctgttatca |
88 |
Q |
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| T |
41796901 |
aaccaaatttcagaacttgaaatgaagtccaaagaaagagaagaggagctatctgctatca |
41796961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 41795568 - 41795615
Alignment:
| Q |
126 |
tgataaagaaaagcagctccagggagctaaagcaggtacaatctctat |
173 |
Q |
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| T |
41795568 |
tgataaagaagagcagctccagggagctaaaacaggtacaatctctat |
41795615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 41803273 - 41803319
Alignment:
| Q |
126 |
tgataaagaaaagcagctccagggagctaaagcaggtacaatctcta |
172 |
Q |
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| T |
41803273 |
tgataaagaaaagcagctccagggaggtaaaaaaggtacaatctcta |
41803319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 41810255 - 41810301
Alignment:
| Q |
126 |
tgataaagaaaagcagctccagggagctaaagcaggtacaatctcta |
172 |
Q |
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|||||||||||||||||| |||||||||||| |||||| |||||||| |
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| T |
41810255 |
tgataaagaaaagcagcttcagggagctaaaacaggtataatctcta |
41810301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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