View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16801_low_13 (Length: 223)
Name: NF16801_low_13
Description: NF16801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16801_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 30265412 - 30265222
Alignment:
| Q |
18 |
aaaaagaggtattaaaactgttacatggtgtaaatttttggttgaagcaggtcaaaattaatcattttcgtacaaattgccggctacatttatcacaatt |
117 |
Q |
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| T |
30265412 |
aaaaagaggtattaaaactgt-acatggtgtaaatttttggttgaagcaggtcaaaattaatcattttcgtacaaattgccggctacatttatcacaatt |
30265314 |
T |
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| Q |
118 |
tattgacatattaatcaccatgtcagtcgtgtgaccatacaattaagtacgaatgtggctcatttactcattactagctaccagtataattt |
209 |
Q |
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| T |
30265313 |
tattgacatattaatcaccatgtcagtcgtgtgaccatacaattaagtacgaatgtggctcatttacacattactagctaccagtacaattt |
30265222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 30279883 - 30280073
Alignment:
| Q |
18 |
aaaaagaggtattaaaactgttacatggtgtaaatttttggttgaagcaggtcaaaattaatcattttcgtacaaattgccggctacatttatcacaatt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30279883 |
aaaaagaggtattaaaactgt-acatggtgtaaatttttggttgaagcaggtcaaaattaatcattttcgtacaaattgccggctacatttatcacaatt |
30279981 |
T |
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| Q |
118 |
tattgacatattaatcaccatgtcagtcgtgtgaccatacaattaagtacgaatgtggctcatttactcattactagctaccagtataattt |
209 |
Q |
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| T |
30279982 |
tattgacatattaatcaccatgtcagtcgtgtgaccatacaattaagtacgaatgtggctcatttacacattactagctaccagtacaattt |
30280073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 30286776 - 30286966
Alignment:
| Q |
18 |
aaaaagaggtattaaaactgttacatggtgtaaatttttggttgaagcaggtcaaaattaatcattttcgtacaaattgccggctacatttatcacaatt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286776 |
aaaaagaggtattaaaactgt-acatggtgtaaatttttggttgaagcaggtcaaaattaatcattttcgtacaaattgccggctacatttatcacaatt |
30286874 |
T |
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| Q |
118 |
tattgacatattaatcaccatgtcagtcgtgtgaccatacaattaagtacgaatgtggctcatttactcattactagctaccagtataattt |
209 |
Q |
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| T |
30286875 |
tattgacatattaatcaccatgtcagtcgtgtgaccatacaattaagtacgaatgtggctcatttacacattactagctaccagtacaattt |
30286966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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