View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16801_low_3 (Length: 426)

Name: NF16801_low_3
Description: NF16801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16801_low_3
NF16801_low_3
[»] chr6 (6 HSPs)
chr6 (256-411)||(31045598-31045753)
chr6 (99-143)||(25995553-25995597)
chr6 (99-143)||(26095016-26095060)
chr6 (226-254)||(26595350-26595378)
chr6 (228-256)||(30457433-30457461)
chr6 (228-256)||(32316972-32317000)
[»] chr8 (6 HSPs)
chr8 (72-143)||(24116151-24116222)
chr8 (75-143)||(10184020-10184088)
chr8 (94-143)||(11114580-11114629)
chr8 (73-139)||(44712083-44712149)
chr8 (76-142)||(6849359-6849427)
chr8 (82-142)||(42131108-42131168)
[»] chr4 (9 HSPs)
chr4 (72-143)||(44250118-44250189)
chr4 (72-143)||(6239475-6239546)
chr4 (75-143)||(48722180-48722248)
chr4 (72-142)||(49768758-49768828)
chr4 (228-267)||(46212958-46212997)
chr4 (111-143)||(52911717-52911749)
chr4 (228-256)||(27964986-27965014)
chr4 (228-256)||(39195054-39195082)
chr4 (72-108)||(52911690-52911726)
[»] chr5 (3 HSPs)
chr5 (77-143)||(37425643-37425709)
chr5 (228-256)||(32872942-32872970)
chr5 (228-256)||(42446335-42446363)
[»] chr1 (6 HSPs)
chr1 (72-143)||(29632543-29632614)
chr1 (72-139)||(47113709-47113776)
chr1 (111-142)||(49906597-49906628)
chr1 (111-141)||(1156591-1156621)
chr1 (228-256)||(49065408-49065436)
chr1 (228-256)||(49647194-49647222)
[»] chr7 (8 HSPs)
chr7 (72-142)||(40507240-40507310)
chr7 (15-71)||(48544515-48544570)
chr7 (222-256)||(41018662-41018696)
chr7 (228-256)||(9428435-9428463)
chr7 (228-256)||(27570354-27570382)
chr7 (228-256)||(40112998-40113026)
chr7 (228-256)||(43942648-43942676)
chr7 (228-256)||(45420093-45420121)
[»] chr3 (4 HSPs)
chr3 (72-140)||(27646612-27646680)
chr3 (228-256)||(20275732-20275760)
chr3 (228-256)||(32146030-32146058)
chr3 (222-258)||(35368619-35368655)
[»] chr2 (5 HSPs)
chr2 (110-143)||(285398-285431)
chr2 (72-108)||(5606699-5606735)
chr2 (111-142)||(5606677-5606708)
chr2 (228-256)||(9647143-9647171)
chr2 (228-256)||(18510674-18510702)
[»] scaffold0056 (1 HSPs)
scaffold0056 (228-257)||(76663-76692)
[»] scaffold0018 (1 HSPs)
scaffold0018 (294-335)||(171884-171925)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 256 - 411
Target Start/End: Original strand, 31045598 - 31045753
Alignment:
Q  256 tccctatatatagtaactatttgaaccaaaattttctgatttatatatgaatatttcgacaattcataggaattgctttaaatttgcatcggggacacat 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31045598 tccctatatatagtaactatttgaaccaaaattttctgatttatatatgaatatttcgacaattcataggaattgctttaaatttgcatcggggacacat 31045697  T
Q  356 agttgatagtagaatatatatgagtatctaatttttagtgtgatggcattgttaat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31045698 agttgatagtagaatatatatgagtatctaatttttagtgtgatggcattgttaat 31045753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 25995597 - 25995553
Alignment:
Q  99 tgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||    
T  25995597 tgacaactaccatgacaacttcatttttctctctttctattggtc 25995553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 26095060 - 26095016
Alignment:
Q  99 tgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||    
T  26095060 tgacaactaccatgacaacttcatttttctctctttctattggtc 26095016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 26595378 - 26595350
Alignment:
Q  226 tcaaaaatagttgttcaaatatcatttct 254  Q
    |||||||||||||||||||||||||||||    
T  26595378 tcaaaaatagttgttcaaatatcatttct 26595350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 30457461 - 30457433
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  30457461 aaaaatagttgttcaaatatcatttctct 30457433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 32316972 - 32317000
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  32316972 aaaaatagttgttcaaatatcatttctct 32317000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 24116222 - 24116151
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24116222 gagcaatgatatatgaacaaccattggtgacaacttccatgacaacttcaattttctctatttctattggtc 24116151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 10184020 - 10184088
Alignment:
Q  75 caatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10184020 caatgatatatgaacaatcattggtgacaacttccatgacaacttcaattttctctatttttattggtc 10184088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 11114580 - 11114629
Alignment:
Q  94 tttggtgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11114580 tttggtgacaacttccatgacaacttcaattttctctatttctattggtc 11114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 44712149 - 44712083
Alignment:
Q  73 agcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctatt 139  Q
    ||||||||||||||||||| | | ||||||||||| || ||||||||  ||||||||||||| ||||    
T  44712149 agcaatgatatatgaacaaccatcggtgacaactttcaagacaacttttattttctctatttatatt 44712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 6849359 - 6849427
Alignment:
Q  76 aatgatatatgaacaat--ctttggtgacaacttccatgacaacttcaattttctctatttctattggt 142  Q
    ||||||||||||||||   | ||||||||||||| ||  |||||||| |||| ||||||||||||||||    
T  6849359 aatgatatatgaacaactgcattggtgacaactttcaaaacaacttccatttcctctatttctattggt 6849427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 42131168 - 42131108
Alignment:
Q  82 atatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggt 142  Q
    |||||||||| | ||| ||||||||| || |||||||| | ||| ||||||||||||||||    
T  42131168 atatgaacaaccattgttgacaactttcaagacaactttattttcctctatttctattggt 42131108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 44250118 - 44250189
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44250118 gagcaatgatatatgaacaatcattggtgacaactttcatgacaacttcaattttctctatttctattggtc 44250189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 6239546 - 6239475
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6239546 gagcaatgatatatgaataattattggtgacaacttccatgacaacttcaattttctctatttttattggtc 6239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 48722248 - 48722180
Alignment:
Q  75 caatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    ||||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48722248 caatgatgtatgaacaaccattggtgacaacttccatgacaatttcaattttctctatttctattggtc 48722180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 49768758 - 49768828
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggt 142  Q
    ||||||||||||||||| || | || ||||||| || ||||| |||||||||||||| |||||||||||||    
T  49768758 gagcaatgatatatgaataaccattagtgacaattttcatgaaaacttcaattttctatatttctattggt 49768828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 46212997 - 46212958
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctctccctatatata 267  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  46212997 aaaaatagttgttcaaatatcatttctcttcctatatata 46212958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 52911717 - 52911749
Alignment:
Q  111 tgacaacttcaattttctctatttctattggtc 143  Q
    |||||||||||||||||||||||||||||||||    
T  52911717 tgacaacttcaattttctctatttctattggtc 52911749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 27965014 - 27964986
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  27965014 aaaaatagttgttcaaatatcatttctct 27964986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 39195082 - 39195054
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  39195082 aaaaatagttgttcaaatatcatttctct 39195054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 52911690 - 52911726
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttc 108  Q
    |||||||||||||||||||| | ||||||||||||||    
T  52911690 gagcaatgatatatgaacaaccattggtgacaacttc 52911726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 37425643 - 37425709
Alignment:
Q  77 atgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37425643 atgatatatgaacaaccgttggtgacaacttccaagacaacttcaattttctctatttctattggtc 37425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 32872942 - 32872970
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  32872942 aaaaatagttgttcaaatatcatttctct 32872970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 42446335 - 42446363
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  42446335 aaaaatagttgttcaaatatcatttctct 42446363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 29632614 - 29632543
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggtc 143  Q
    ||||||||||||||||| || | || ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  29632614 gagcaatgatatatgaataaccatttgtgacaacttctatgacaacttcaattttctctatttttattggtc 29632543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 47113776 - 47113709
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctatt 139  Q
    |||||||||||||||||||| | ||| |||||||||  | |||||||| | |||||||||||||||||    
T  47113776 gagcaatgatatatgaacaaccattgttgacaacttttaagacaactttatttttctctatttctatt 47113709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 49906628 - 49906597
Alignment:
Q  111 tgacaacttcaattttctctatttctattggt 142  Q
    ||||||||||||||||||||||||||||||||    
T  49906628 tgacaacttcaattttctctatttctattggt 49906597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 1156621 - 1156591
Alignment:
Q  111 tgacaacttcaattttctctatttctattgg 141  Q
    |||||||||||||||||||||||||||||||    
T  1156621 tgacaacttcaattttctctatttctattgg 1156591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 49065408 - 49065436
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  49065408 aaaaatagttgttcaaatatcatttctct 49065436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 49647194 - 49647222
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  49647194 aaaaatagttgttcaaatatcatttctct 49647222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 40507310 - 40507240
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattggt 142  Q
    |||||||||||||||||||| | ||  | ||||||||||||||||||| ||||||||||||||||||||||    
T  40507310 gagcaatgatatatgaacaaccattaataacaacttccatgacaactttaattttctctatttctattggt 40507240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 48544570 - 48544515
Alignment:
Q  15 tatttgagctagagaaatcgttatcataatgaacagaacacacatggaaatcaactc 71  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  48544570 tatttgagctagagaa-tcgttattataatgaacagaacacacatggaaatgaactc 48544515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 41018696 - 41018662
Alignment:
Q  222 ttgttcaaaaatagttgttcaaatatcatttctct 256  Q
    |||| ||||||||||||||||||||||||||||||    
T  41018696 ttgtccaaaaatagttgttcaaatatcatttctct 41018662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 9428463 - 9428435
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  9428463 aaaaatagttgttcaaatatcatttctct 9428435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 27570382 - 27570354
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  27570382 aaaaatagttgttcaaatatcatttctct 27570354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 40112998 - 40113026
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  40112998 aaaaatagttgttcaaatatcatttctct 40113026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 43942676 - 43942648
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  43942676 aaaaatagttgttcaaatatcatttctct 43942648  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 45420093 - 45420121
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  45420093 aaaaatagttgttcaaatatcatttctct 45420121  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 27646680 - 27646612
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttccatgacaacttcaattttctctatttctattg 140  Q
    ||||||||||||||||||||   ||| ||||||||| ||||||||||| | ||| ||||||||||||||    
T  27646680 gagcaatgatatatgaacaactattgttgacaactttcatgacaactttattttcctctatttctattg 27646612  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 20275732 - 20275760
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  20275732 aaaaatagttgttcaaatatcatttctct 20275760  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 32146030 - 32146058
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  32146030 aaaaatagttgttcaaatatcatttctct 32146058  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 35368655 - 35368619
Alignment:
Q  222 ttgttcaaaaatagttgttcaaatatcatttctctcc 258  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  35368655 ttgtacaaaaatagttgtacaaatatcatttctctcc 35368619  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 285398 - 285431
Alignment:
Q  110 atgacaacttcaattttctctatttctattggtc 143  Q
    ||||||||||||||||||||||||||||||||||    
T  285398 atgacaacttcaattttctctatttctattggtc 285431  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 5606735 - 5606699
Alignment:
Q  72 gagcaatgatatatgaacaatctttggtgacaacttc 108  Q
    |||||||||||||||||||||| ||||||||||||||    
T  5606735 gagcaatgatatatgaacaatcattggtgacaacttc 5606699  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 5606708 - 5606677
Alignment:
Q  111 tgacaacttcaattttctctatttctattggt 142  Q
    ||||||||||||||||||||||||||||||||    
T  5606708 tgacaacttcaattttctctatttctattggt 5606677  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 9647171 - 9647143
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  9647171 aaaaatagttgttcaaatatcatttctct 9647143  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 18510702 - 18510674
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctct 256  Q
    |||||||||||||||||||||||||||||    
T  18510702 aaaaatagttgttcaaatatcatttctct 18510674  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 76663 - 76692
Alignment:
Q  228 aaaaatagttgttcaaatatcatttctctc 257  Q
    ||||||||||||||||||||||||||||||    
T  76663 aaaaatagttgttcaaatatcatttctctc 76692  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 171925 - 171884
Alignment:
Q  294 atttatatatgaatatttcgacaattcataggaattgcttta 335  Q
    |||| ||||||||||||| |||||||||||||||||| ||||    
T  171925 atttttatatgaatattttgacaattcataggaattgtttta 171884  T

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