View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16801_low_8 (Length: 308)

Name: NF16801_low_8
Description: NF16801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16801_low_8
NF16801_low_8
[»] chr4 (2 HSPs)
chr4 (20-300)||(25105993-25106278)
chr4 (126-226)||(18927914-18928015)
[»] chr3 (1 HSPs)
chr3 (117-243)||(23909561-23909688)
[»] chr7 (1 HSPs)
chr7 (121-240)||(9415716-9415836)
[»] chr5 (1 HSPs)
chr5 (99-262)||(24317346-24317512)
[»] chr6 (1 HSPs)
chr6 (132-262)||(10916792-10916925)
[»] chr8 (3 HSPs)
chr8 (126-250)||(18540703-18540828)
chr8 (161-244)||(30876360-30876444)
chr8 (154-244)||(12539015-12539105)
[»] chr2 (1 HSPs)
chr2 (107-226)||(24488590-24488710)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 25105993 - 25106278
Alignment:
Q  20 cacagtgcgagcgagggtggctcatggggtccgacagttgcaaacgcccatgcaggccgagggtaactcacatcctagactgagagttacccatgtatgt 119  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||    
T  25105993 cacagtgcgagcaagggtggctcacggggtccgagagttgcaaacgcctatgcaggccgagggtaactcacatcctagactgagagttgcccacatatgt 25106092  T
Q  120 acctga----aggtatgattgttatgataatgtttgtcagccaagccctacctaacaactatttataccaaacattagccttgggttacgtataacactt 215  Q
    ||||||    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25106093 acctgactgaaggtatgattgttatgataatgtttttcaaccaagccctacctaacaactatttataccaaacattagccttgggttacgtataacactt 25106192  T
Q  216 cttaccctaaattgtgactgcacctcttggaccccactgacttgggctgctgaacatatgtaggtacacaaa-cccccttcatctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  25106193 cttaccctaaattgtgactgcacctcttggaccccactgacttgggcggctgagcatatgtaggtacacaaaccccccttcatctc 25106278  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 18928015 - 18927914
Alignment:
Q  126 aggtatgattgttatgataatgtttgtcagccaagccctacctaacaactatttataccaaacatt-agccttgggttacgtataacacttcttacccta 224  Q
    ||||| |||||||| ||| | |||||||||||||||||||  ||||  ||||||||||| |  | | |||||||||| | || | |||||||||||||||    
T  18928015 aggtacgattgttaggattaggtttgtcagccaagccctatgtaacccctatttatacccaggaatcagccttgggtcaggtgtgacacttcttacccta 18927916  T
Q  225 aa 226  Q
    ||    
T  18927915 aa 18927914  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 23909561 - 23909688
Alignment:
Q  117 tgtacctgaaggtatgattgttatgataatgtttgtcagccaagccctacctaacaactatttata-ccaaacattagccttgggttacgtataacactt 215  Q
    |||||||||||||| |||||||| ||||| |||||| |||||||||||||||||| |||||||||| ||  |||||| |||||| | | |||| ||||||    
T  23909561 tgtacctgaaggtacgattgttaggataaggtttgttagccaagccctacctaaccactatttatacccggacattaaccttggatcatgtatgacactt 23909660  T
Q  216 cttaccctaaattgtgactgcacctctt 243  Q
     |||||||| ||||||||||||||||||    
T  23909661 tttaccctatattgtgactgcacctctt 23909688  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 9415836 - 9415716
Alignment:
Q  121 cctgaaggtatgattgttatgataatgtttgtcagccaagccctacctaacaactatttata-ccaaacattagccttgggttacgtataacacttctta 219  Q
    ||||||| || |||||||| ||||| ||||| ||||||||||||||||||| |||||||||| |||  |||||||||||  | | |||| | ||||||||    
T  9415836 cctgaagatacgattgttaggataaggtttgccagccaagccctacctaaccactatttatacccatgcattagccttgactcaggtatgatacttctta 9415737  T
Q  220 ccctaaattgtgactgcacct 240  Q
    |||||||||||||||| ||||    
T  9415736 ccctaaattgtgactggacct 9415716  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 24317512 - 24317346
Alignment:
Q  99 ctgagagttacccatgtatgtacctgaaggtatgattgttatgataatgtttgtcagccaagccctacctaacaactatttatacc-aaacattagcctt 197  Q
    ||||| ||||||||||| |||||||| | ||| |||||| | ||||| ||||  || |||||||||||||||| |||||||||||| | || ||||||||    
T  24317512 ctgagggttacccatgtttgtacctgcaagtacgattgtcaggataaggttttccatccaagccctacctaaccactatttatacctagaccttagcctt 24317413  T
Q  198 gggttacgtataacacttcttacccta-aattgtgactgcacctcttgga-ccccactgacttgggc 262  Q
    | |||| |||| |||||||||| | || | |||||||||||||| ||| | ||||||||| ||||||    
T  24317412 gagttatgtatgacacttcttatcttagacttgtgactgcaccttttgaacccccactgagttgggc 24317346  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 262
Target Start/End: Original strand, 10916792 - 10916925
Alignment:
Q  132 gattgttatgataatgtttgtcagccaagccctacctaacaactatttata-ccaaacattagccttgggttacgtataacacttcttaccctaa-attg 229  Q
    |||||| | ||||| ||||||||||||||||||||||||| |||||||||| |||    ||| ||||| || |||||| ||||||||||| ||||  |||    
T  10916792 gattgtcaggataaggtttgtcagccaagccctacctaaccactatttatacccatgtcttaaccttgagtcacgtatgacacttcttactctaagcttg 10916891  T
Q  230 tgactgcacctcttgga-ccccactgacttgggc 262  Q
    ||| ||||||||||| | ||||||||||||||||    
T  10916892 tgattgcacctcttgaacccccactgacttgggc 10916925  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 18540828 - 18540703
Alignment:
Q  126 aggtatgattgttatgataatgtttgtcagccaagccctacctaacaactatttataccaaacattagccttgggttacgtataacacttcttaccctaa 225  Q
    |||||||||||| | ||||| ||||| | | |||||||||||||||  |||| |||||| | | |||||||||||  | |||| ||||||||||||||||    
T  18540828 aggtatgattgtcaggataaggtttgccggtcaagccctacctaactcctatatatacccagccttagccttgggacaagtatgacacttcttaccctaa 18540729  T
Q  226 a-ttgtgactgcacctcttggacccc 250  Q
    | |||||||  | ||||||| |||||    
T  18540728 acttgtgacctctcctcttgaacccc 18540703  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 30876360 - 30876444
Alignment:
Q  161 ccctacctaacaactatttataccaaa-cattagccttgggttacgtataacacttcttaccctaaattgtgactgcacctcttg 244  Q
    |||||||| || |||||||||||| |  |||||||||||||||| |  | |||||||||| ||| |||||||| |||||||||||    
T  30876360 ccctaccttaccactatttatacctaggcattagccttgggttaggcttgacacttcttatcctcaattgtgattgcacctcttg 30876444  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 12539015 - 12539105
Alignment:
Q  154 agccaagccctacctaacaactatttatac-caaacattagccttgggttacgtataacacttcttaccctaaattgtgactgcacctcttg 244  Q
    |||||||||||||||||| ||||||||||| ||    |||||||| |||   || | ||||||||||||||||||| |||||||||||||||    
T  12539015 agccaagccctacctaaccactatttatactcaggtcttagccttaggtcgggt-tgacacttcttaccctaaattatgactgcacctcttg 12539105  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 24488590 - 24488710
Alignment:
Q  107 tacccatgtatgtacctgaaggtatgattgttatgataatgtttgtcagccaagccctacctaacaactatttatacc-aaacattagccttgggttacg 205  Q
    |||||||||  ||||| | ||||  |||||| | ||||| |||| ||||||||| |||||||| | ||||||||||||   || |||||||||||| | |    
T  24488590 tacccatgtccgtaccagtaggtgcgattgtcaggataacgtttttcagccaagtcctacctatccactatttatacctggaccttagccttgggtcatg 24488689  T
Q  206 tataacacttcttaccctaaa 226  Q
    ||| |||||||||||||||||    
T  24488690 tatgacacttcttaccctaaa 24488710  T

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