View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16802_high_2 (Length: 406)
Name: NF16802_high_2
Description: NF16802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16802_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 28495779 - 28495398
Alignment:
| Q |
10 |
catcatcatggatacaattagagatgaagaaaggccacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagcc |
109 |
Q |
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| T |
28495779 |
catcatcatggatacaatcagagatgaagaaaaggcacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagcc |
28495680 |
T |
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| Q |
110 |
aaacttatagcacaaaagggtcaccaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgttcctctcatca |
209 |
Q |
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| T |
28495679 |
aagcttatagcacaaaagggtcaccaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgctcctctcatca |
28495580 |
T |
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| Q |
210 |
aatttgtgagccttccattgccaaaagttgataaccttcctgaaaatgcagaggctactacagatattccttatgacgttgtaccacacctgaaaaatgc |
309 |
Q |
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| T |
28495579 |
aatttgtgagccttccattgccaaaagttgataaccttcctgaaaatgcagaggctactacagatattccttatgacgttgtaccacacctgaaaaatgc |
28495480 |
T |
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| Q |
310 |
ctttgacaaacttgaaaaacctttcactcatttccttgaatcttctaatgctgattggattttgcatgattttgttcctttt |
391 |
Q |
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| T |
28495479 |
ctttgacaaacttgaacaacctttaactcatttccttcaatcttctaatgctgattggattttgcatgattttgttcctttt |
28495398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 28508318 - 28507949
Alignment:
| Q |
14 |
atcatggatacaattagagatgaagaaaggccacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagccaaac |
113 |
Q |
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| T |
28508318 |
atcatggataccattagagatgaagaaaaggcacttcacatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaactagccaagc |
28508219 |
T |
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| Q |
114 |
ttatagcacaaaagggtcaccaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgttcctctcatcaaatt |
213 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28508218 |
ttatagcacaaaagggtcacaaagttagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgctcctctcatcaaatt |
28508119 |
T |
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| Q |
214 |
tgtgagccttccattgccaaaagttgataaccttcctgaaaatgcagaggctactacagatattccttatgacgttgtaccacacctgaaaaatgccttt |
313 |
Q |
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| T |
28508118 |
tgtaaaccttccattgccaaaagttgataaccttcctgaaaacgcagaggctactacagacattccttatgatgtcgtaccataccttaaaaatgccttt |
28508019 |
T |
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| Q |
314 |
gacaaacttgaaaaacctttcactcatttccttgaatcttctaatgctgattggattttgcatgattttg |
383 |
Q |
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| T |
28508018 |
gacaaacttgaaaaacctttcacccatttccttgaaacttctaatgctggttggatttttcatgattttg |
28507949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 32 - 391
Target Start/End: Complemental strand, 28492438 - 28492079
Alignment:
| Q |
32 |
gatgaagaaaggccacttcatatagtaatgtttccatggctagcctttggtcacatgattccatatcttgaattagccaaacttatagcacaaaagggtc |
131 |
Q |
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|||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||| |
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| T |
28492438 |
gatgaagaaaaggcacttcacatagtaatgtttccatggctagcctttggtcacatgatcccataccttgaagtggccaaacttatagcacaaaagggtc |
28492339 |
T |
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| Q |
132 |
accaagtaagttatgtttctacaccaagaaacatacaacgcctccctaaactaccaccaaatgttgttcctctcatcaaatttgtgagccttccattgcc |
231 |
Q |
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||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||| |||| |
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| T |
28492338 |
accaagttagctatgtttctaccccaagaaacatacaacgcctccctcaactaccaccaaacgttgctcctctcatcaaatttgtgagtcttccaatgcc |
28492239 |
T |
|
| Q |
232 |
aaaagttgataaccttcctgaaaatgcagaggctactacagatattccttatgacgttgtaccacacctgaaaaatgcctttgacaaacttgaaaaacct |
331 |
Q |
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||||||||||| ||||| |||||||||||||| ||||||||| | | | || || | | | |||| ||| |||| |||||||| || ||| ||||| |
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| T |
28492238 |
taaagttgataatcttccagaaaatgcagaggccactacagatgtctcatgggatgtatttcaataccttaaagatgcatttgacaagctggaacaacct |
28492139 |
T |
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| Q |
332 |
ttcactcatttccttgaatcttctaatgctgattggattttgcatgattttgttcctttt |
391 |
Q |
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|| || |||| |||||||||||| ||||||||||||| ||||||||||||| ||||||| |
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| T |
28492138 |
ttgaccaattttcttgaatcttctgatgctgattggatcttgcatgattttgctcctttt |
28492079 |
T |
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