View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16802_low_1 (Length: 652)
Name: NF16802_low_1
Description: NF16802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16802_low_1 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 11 - 634
Target Start/End: Original strand, 40326816 - 40327436
Alignment:
| Q |
11 |
atcatcatctgttgcagaaaatgcccttttgataaccttttctgaaatcccttgatcttcagctgtaaaacctgatttacccacnnnnnnntcatcatat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40326816 |
atcatcatctgttgcagaaaatgcccttttgataaccttttctgaaatcccttgatcttcagctgtaaaacctgatttacccacaaaaaaatcatcatat |
40326915 |
T |
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| Q |
111 |
aaggataccaatattttatataccaataattacagtggtactaatgaccattttacaactgtttcagacaaaatttgaacccggtcccttgaggttataa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40326916 |
aaggataccaatattttatataccaataattacagtggtactaatggccattttacaactgtttcagacaaaatttgaacccggtcccttgaggttataa |
40327015 |
T |
|
| Q |
211 |
ggtcaaa--ctcttgcaactctaggaaacaaatgtttccgtgtatgtttggaatcacgataattaaagcttcatatgtagtttttgtcaaaattagggcg |
308 |
Q |
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|| |||| ||| || | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
40327016 |
gggcaaaacctcatgga----taggaaacaaatatttccgtgtatgtttggaatcacgataattaaagcttcatatatagtttttgtcaaaattacggcg |
40327111 |
T |
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| Q |
309 |
acacttgtgattatggaaaaaaggactatgattccaaacatgcacttgatagttggatataagttacttggtttttctaggaatcaattcatttgaaaaa |
408 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40327112 |
acacttgtgattatggaaaa-aggactatgattccaaacatgcacttgatagttggatataagttacttggtttttctaggaatcaattgatttgaaaaa |
40327210 |
T |
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| Q |
409 |
catcatatagcaaaaccatatttctaatatatgatatatatgtttgtaataaagttaagagcatactcttgaaattggagaatagattgtcattaacaaa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40327211 |
catcatatagcaaaaccatatttctaatatatgatatatatgtttgtaataaagttaagagcatactcttgaaattggagaatagattgtcattaacaaa |
40327310 |
T |
|
| Q |
509 |
ctgagaagctgcagttccaccatgaccgtcataaacaccaataaaggttccttgaggacccaaataatcagaactcataggtcctgattcaagttggcta |
608 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40327311 |
ctgagaagctgcagttccaccatgaccatcataaacacctataaaggttccttgaggacccaaataatcagaactcataggtcctgattcaagttggcta |
40327410 |
T |
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| Q |
609 |
cgatcctccaacgaactatttgcttg |
634 |
Q |
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| T |
40327411 |
cgatcctccaacgaactatttgcttg |
40327436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 634
Target Start/End: Original strand, 28939686 - 28939849
Alignment:
| Q |
471 |
atactcttgaaattggagaatagattgtcattaacaaactgagaagctgcagttccaccatgaccgtcataaacaccaataaaggttccttgaggaccca |
570 |
Q |
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||||| |||| |||| | || ||||||||| | ||||| ||||||||| ||| |||||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
28939686 |
atacttttgagattgcaaaaaagattgtcactgacaaattgagaagcttcagctccaccatgaccatcataaacaccaataaaagtcccttgaggaccca |
28939785 |
T |
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| Q |
571 |
aataatcagaactcataggtcctgattcaagttggctacgatcctccaacgaactatttgcttg |
634 |
Q |
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||| | |||||||| |||||| || |||| || || | ||||||||| |||||||| ||||| |
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| T |
28939786 |
aatggttagaactcaaaggtccagactcaaattcacttctatcctccaatgaactattagcttg |
28939849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 7047094 - 7047129
Alignment:
| Q |
183 |
atttgaacccggtcccttgaggttataaggtcaaac |
218 |
Q |
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| T |
7047094 |
atttgaactcggtcccttgaggttataaggtcaaac |
7047129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 549
Target Start/End: Original strand, 73502 - 73553
Alignment:
| Q |
498 |
tcattaacaaactgagaagctgcagttccaccatgaccgtcataaacaccaa |
549 |
Q |
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| T |
73502 |
tcattaacaaacttagaagcttcaggaccaccatgaccatcataaacaccaa |
73553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 32190518 - 32190546
Alignment:
| Q |
194 |
gtcccttgaggttataaggtcaaactctt |
222 |
Q |
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| T |
32190518 |
gtcccttgaggttataaggtcaaactctt |
32190546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 53028035 - 53028063
Alignment:
| Q |
194 |
gtcccttgaggttataaggtcaaactctt |
222 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53028035 |
gtcccttgaggttataaggtcaaactctt |
53028063 |
T |
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