View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16802_low_2 (Length: 407)
Name: NF16802_low_2
Description: NF16802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16802_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 10254216 - 10254527
Alignment:
| Q |
14 |
atgaaagttagatacttatatttcagattcaaaactctaatgtgttgtttgtgtcctaaaataattcataatatcttcannnnnnnaaataacttagatt |
113 |
Q |
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| T |
10254216 |
atgaaagttagatacttatatttcagattcaaaactctaatgtgttgtttgtgtcctaaaataattcataatatcttcatttttttaaataacttaaatt |
10254315 |
T |
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| Q |
114 |
tcattttcaacctattaacaatcacatatttgannnnnnnnn---cccatccaacacaagataagtatcgtacctctcccacctcacacaaatcacaatt |
210 |
Q |
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| T |
10254316 |
tcattttcaacctattaacaatcacatatttgattttttttttttcccatccaacacaagataagtatcgtacctc--ccacctcacacaaatcacaatt |
10254413 |
T |
|
| Q |
211 |
tccccaatctttctttcactacaacccccaaacattatttcctccaacataaccatggtccctaaacccatcataataacaagtaaacaaccaccaacaa |
310 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254414 |
tctccaatctt----tcactacaacccccaaacattatttcctccaacataaccatggtccctaaacccatcataataacaagtaaacaaccaccaacaa |
10254509 |
T |
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| Q |
311 |
cttcttctatccctccat |
328 |
Q |
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|||||||||||||||||| |
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| T |
10254510 |
cttcttctatccctccat |
10254527 |
T |
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